PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Dof

Protein Properties

Length: 491aa MW: 52809.4 Da PI: 7.0259

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA003252-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.4	1.5e-38	111	171	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCy+nny+++qPr+fC++C+ryWt+GGa+rnvPvG+grr+nk++s BGIOSGA003252-PA 111 PDKILPCPRCNSMETKFCYFNNYNVHQPRHFCRNCQRYWTAGGAMRNVPVGAGRRRNKHVS 171 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	108	168	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-31	113	169	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.602	115	169	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	117	153	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MAALRQGDDP AIKLFGRTIP LLLDPAAAAA AAAADEVMPN LGNGVKTNND LPLVSDKLLI 60 VKGIPFCPNN SKKNDLQGIS RPDGRIEIDS MTEDVKTEPD GSVPEKILKK PDKILPCPRC 120 NSMETKFCYF NNYNVHQPRH FCRNCQRYWT AGGAMRNVPV GAGRRRNKHV SKYCQAMMTC 180 NNTVAPGDVS DVVHHQVITH GSSLLPATLK ENETPTEFIS EVPPCKSSAS ILDIGEPNDT 240 DLVPLASGDN KEEKSCASSV VVSSCSENLM PDNAIMKEPN NRSGCCNGVA LPFPTGPALV 300 LPWSLGWNSV ALMPATQCSM QPVLGLKDGI PCPPSWPPQL MVPAPGICTP VVPIPLVPPL 360 WSCFPGWPNG MWNAQCPGGN TTVLPSTAPN KISCSGSSSL VLGKHSREES LQEEEKTRNY 420 LWVPKTLRID DPAEAAKSSI WATLGIKPDD KGIFKSFQPN VAKNGTAPES PQALQANPAA 480 FSRSQSFQET T

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MAALRQGDDP AIKLFGRTIP LLLDPAAAAA AAAADEVMPN LGNGVKTNND LPLVSDKLLI  60
VKGIPFCPNN SKKNDLQGIS RPDGRIEIDS MTEDVKTEPD GSVPEKILKK PDKILPCPRC  120
NSMETKFCYF NNYNVHQPRH FCRNCQRYWT AGGAMRNVPV GAGRRRNKHV SKYCQAMMTC  180
NNTVAPGDVS DVVHHQVITH GSSLLPATLK ENETPTEFIS EVPPCKSSAS ILDIGEPNDT  240
DLVPLASGDN KEEKSCASSV VVSSCSENLM PDNAIMKEPN NRSGCCNGVA LPFPTGPALV  300
LPWSLGWNSV ALMPATQCSM QPVLGLKDGI PCPPSWPPQL MVPAPGICTP VVPIPLVPPL  360
WSCFPGWPNG MWNAQCPGGN TTVLPSTAPN KISCSGSSSL VLGKHSREES LQEEEKTRNY  420
LWVPKTLRID DPAEAAKSSI WATLGIKPDD KGIFKSFQPN VAKNGTAPES PQALQANPAA  480
FSRSQSFQET T

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.88878	0.0	callus\| flower\| leaf\| panicle\| root\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32977002	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066984	0.0	AK066984.1 Oryza sativa Japonica Group cDNA clone:J013091E10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635234.1	0.0	cyclic dof factor 2
TrEMBL	B8ACJ1	0.0	B8ACJ1_ORYSI; Uncharacterized protein
STRING	OGLUM01G12710.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-62	cycling DOF factor 2