 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
BGIOSGA003124-PA |
| Common Name | OsI_01120 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
| Family |
LBD |
| Protein Properties |
Length: 249aa MW: 26077.3 Da PI: 9.8748 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA003124-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 102.2 | 4.9e-32 | 11 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlka 92
aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka +e r++a+++l++eA++r rdP +G+++ ++ l+++ + l+a
BGIOSGA003124-PA 11 ACAVCKHQRRKCEPNCELAAYFPANRMNDFRALHLVFGVANLTKLIKANATEAaRRRAAETLTWEARWRERDPSEGCYREVSCLRRDNAALRA 103
7**********************************************9977766*************************************** PP
DUF260 93 elallkee 100
e a+l+++
BGIOSGA003124-PA 104 ENAALRRQ 111
*9998876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 249 aa
Download sequence Send
to blast |
MTGGGSGGAG ACAVCKHQRR KCEPNCELAA YFPANRMNDF RALHLVFGVA NLTKLIKANA 60
TEAARRRAAE TLTWEARWRE RDPSEGCYRE VSCLRRDNAA LRAENAALRR QADQCACCAG 120
AAGVRHASSP TTLQHQLLLV SAYNGATAAR PGNVVPHNAT VVPGGFVAAA GGVRGANGNG 180
AMSSVRPPPH HVQAPATQTV TGFVAHAQDD RYRAVSVCPP AANAAAVPRS GAAVRGQGDY 240
RDKISDAAR
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
