PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA002935-PA

Common Name

OsI_00742

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Dof

Protein Properties

Length: 214aa MW: 22073.2 Da PI: 9.35

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA002935-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.3	3.3e-38	27	81	4	58
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 + l+cprC+stntkfCyynny+l+qPr+fCkaCrryWt+GGalrnvPvGgg+r++ BGIOSGA002935-PA 27 EGLACPRCESTNTKFCYYNNYNLAQPRHFCKACRRYWTRGGALRNVPVGGGTRNK 81 6789*************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	28.416	29	83	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-32	29	81	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-23	31	79	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MEVAEGRTVA AAAGGGGLGG GARTEAEGLA CPRCESTNTK FCYYNNYNLA QPRHFCKACR 60 RYWTRGGALR NVPVGGGTRN KVAPAPCTGR RKRAAHAAHA AAPPTTTTAS SAPLPLMPPA 120 VAYELPFLPP PPPLPLAAVD PDRRLLDLGG SFTSLLAPAQ LHNGDFTTGF LLGTMSSAPP 180 PPPPAATSTP SPAPAAHPPV SDSIWAMGWP HLSI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645936.1	5e-93	dof zinc finger protein DOF3.1
TrEMBL	B8ADQ0	1e-150	B8ADQ0_ORYSI; Uncharacterized protein
STRING	ONIVA01G06900.1	2e-92	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-29	DOF zinc finger protein 1