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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA002535-PA | ||||||||
Common Name | OsI_00096 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 71aa MW: 7836.07 Da PI: 6.5151 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.4 | 0.00029 | 14 | 31 | 38 | 55 |
STCHHHHHHHHHHHHHHH CS HLH 38 lsKaeiLekAveYIksLq 55 ++ +++LekA++Y+k Lq BGIOSGA002535-PA 14 VDLVTMLEKAINYVKFLQ 31 666899***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.32E-5 | 13 | 42 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-4 | 17 | 38 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 71 aa Download sequence Send to blast |
MATMEHSKAP SINVDLVTML EKAINYVKFL QLQVKVLATD EFWPAQGGKA PELSQVKDAL 60 DAILSSQHPN K |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32993796 | 2e-96 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in flowers. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108587 | 4e-94 | AK108587.1 Oryza sativa Japonica Group cDNA clone:002-146-B03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006643664.1 | 3e-34 | PREDICTED: transcription factor bHLH81-like | ||||
Refseq | XP_015643698.1 | 6e-34 | transcription factor bHLH83 | ||||
Swissprot | Q9C707 | 2e-27 | BH083_ARATH; Transcription factor bHLH83 | ||||
TrEMBL | B8ACV7 | 1e-44 | B8ACV7_ORYSI; Uncharacterized protein | ||||
STRING | OB01G10850.1 | 1e-33 | (Oryza brachyantha) | ||||
STRING | LPERR01G00690.1 | 2e-33 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1412 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 7e-30 | ROOT HAIR DEFECTIVE6 |