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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
BGIOSGA002535-PA |
| Common Name | OsI_00096 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family |
bHLH |
| Protein Properties |
Length: 71aa MW: 7836.07 Da PI: 6.5151 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA002535-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 12.4 | 0.00029 | 14 | 31 | 38 | 55 |
STCHHHHHHHHHHHHHHH CS
HLH 38 lsKaeiLekAveYIksLq 55
++ +++LekA++Y+k Lq
BGIOSGA002535-PA 14 VDLVTMLEKAINYVKFLQ 31
666899***********9 PP
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed constitutively in flowers. {ECO:0000269|PubMed:12679534}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK108587 | 4e-94 | AK108587.1 Oryza sativa Japonica Group cDNA clone:002-146-B03, full insert sequence. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Coego A, et al.
The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
Plant J., 2014. 77(6): p. 944-53
[PMID:24456507] - Lin CY, et al.
Pathways involved in vanadate-induced root hair formation in Arabidopsis.
Physiol Plant, 2015. 153(1): p. 137-48
[PMID:24833217] - Grierson C,Nielsen E,Ketelaarc T,Schiefelbein J
Root hairs.
Arabidopsis Book, 2014. 12: p. e0172
[PMID:24982600] - Kim CM,Dolan L
ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon.
PLoS Genet., 2016. 12(8): p. e1006211
[PMID:27494519] - Moro CF, et al.
S-nitrosoglutathione promotes cell wall remodelling, alters the transcriptional profile and induces root hair formation in the hairless root hair defective 6 (rhd6) mutant of Arabidopsis thaliana.
New Phytol., 2017. 213(4): p. 1771-1786
[PMID:27880005] - Bahmani R,Kim DG,Kim JA,Hwang S
The Density and Length of Root Hairs Are Enhanced in Response to Cadmium and Arsenic by Modulating Gene Expressions Involved in Fate Determination and Morphogenesis of Root Hairs in Arabidopsis.
Front Plant Sci, 2016. 7: p. 1763
[PMID:27933081] - Liao X,Lovett B,Fang W,St Leger RJ
Metarhizium robertsii produces indole-3-acetic acid, which promotes root growth in Arabidopsis and enhances virulence to insects.
Microbiology (Reading, Engl.), 2017. 163(7): p. 980-991
[PMID:28708056] - Feng Y, et al.
Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
[PMID:29233944]
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