PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA002287-PA | ||||||||
Common Name | OsI_00598 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 279aa MW: 29876.9 Da PI: 8.4806 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.5 | 4e-07 | 57 | 82 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C +f +G C + d C+FaHg BGIOSGA002287-PA 57 YKTRVCETFVTSGRCMFEDGCTFAHG 82 9************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-14 | 51 | 88 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-9 | 55 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0016 | 56 | 83 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.45 | 56 | 84 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-4 | 57 | 82 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.49 | 139 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.709 | 139 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 142 | 164 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.29E-5 | 142 | 165 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MAGRGGMVEW EVGRRRDSED VIVLSPGPPA RRRPPPVKAV EPESGGFAYE PPEKLFYKTR 60 VCETFVTSGR CMFEDGCTFA HGDEELRPSL TACAGGWRKP SPSLSAAAPP VSVAPTPPPA 120 QVVHELLARG SGSGGGGHRA ITKVCFEFRD KGICYFGETC AFPHVSAAEI RQGSRLSSMS 180 SSSWEMPARR SVAVTVPRTF VSVPPVAPPP PPPHYRVNNS SSYNAASMAA AAPAASDANL 240 VAQQPPPEQG GRKMTRLEML SLKKMTGIYG DWLEGYEHP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.74835 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32992871 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107662 | 0.0 | AK107662.1 Oryza sativa Japonica Group cDNA clone:002-131-G11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622143.1 | 0.0 | zinc finger CCCH domain-containing protein 1 | ||||
Swissprot | Q5VR07 | 0.0 | C3H1_ORYSJ; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | B8ADI0 | 0.0 | B8ADI0_ORYSI; Uncharacterized protein | ||||
STRING | OS01T0174600-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13364 | 20 | 30 |
Publications ? help Back to Top | |||
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