PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA002186-PA
Common NameHOX29, OsI_000758
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 886aa    MW: 96229.2 Da    PI: 6.4264
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA002186-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.6e-19563357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  BGIOSGA002186-PA  5 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 63
                      6789*****************************************************97 PP
2START58.62e-19172268297
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e+++ka+ ++  W +++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W ++++++++++v+  g  g+++
  BGIOSGA002186-PA 172 IAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVVNVLPAGanGTIE 263
                       789*******************************************************.8888888888******************995555 PP

                       EEEEX CS
             START  93 lmvae 97 
                       l +++
  BGIOSGA002186-PA 264 LLYMQ 268
                       44433 PP
3START93.83.4e-3029340497204
                       XXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
             START  97 elqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                       +l+a+++l+p Rdf+ +Ry+  l +g++v++++S++s+q  p+    ++++R+e+lpSg+li+p+++g+s +++v+h+dl+ +++++++r+l+
  BGIOSGA002186-PA 293 QLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLY 385
                       789***************************************999999********************************************* PP

                       HHHHHHHHHHHHHHTXXXX CS
             START 186 ksglaegaktwvatlqrqc 204
                       +s+++ ++k+ +a+l++++
  BGIOSGA002186-PA 386 ESSAMVAQKISMAALRYLR 404
                       ***************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.597164IPR001356Homeobox domain
SMARTSM003896.9E-15268IPR001356Homeobox domain
CDDcd000864.08E-16565No hitNo description
PfamPF000462.3E-16563IPR001356Homeobox domain
SuperFamilySSF466891.15E-16666IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-18763IPR009057Homeodomain-like
CDDcd146864.38E-65796No hitNo description
PROSITE profilePS5084823.77162406IPR002913START domain
SuperFamilySSF559617.55E-32163259No hitNo description
CDDcd088753.57E-68166405No hitNo description
Gene3DG3DSA:3.30.530.202.5E-17169381IPR023393START-like domain
SMARTSM002342.6E-34171406IPR002913START domain
PfamPF018521.2E-16172268IPR002913START domain
SuperFamilySSF559617.55E-32289385No hitNo description
PfamPF018522.5E-27293404IPR002913START domain
PfamPF086704.0E-49740885IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
MDASKYVRYT PEQVEALERL YYECPKPSSL RRQQLVRECP ALANVDPKQI KVWFQNRRCR  60
EKQRKESSRL QALNRKLTAM NKLLMEENDR LQKQVSQLVY DHGRHGVAAA GMMRRVPAFP  120
PQAAAAAGHQ LATATDTSCE SVVTSGHHHQ QQQHNVVQPP PRDASPAGLM SIAEETLTEF  180
LSKATGTAVE WLQMPGMKPG PDSIGIIAIS HGCAGVAARA CGLVGMEPAK VAEILKDRPL  240
WLRDCRSMDV VNVLPAGANG TIELLYMQAR THKPENSEPE PEILKLKFVF DLQLYAPTTL  300
APARDFWLLR YTSILDDGSL VVCERSLSSK QGGPSMPLVQ PFIRGEMLPS GFLIRPSDGG  360
GSVIHIVDHM DLEPWSVPEV VRPLYESSAM VAQKISMAAL RYLRQVAHED TRSVITGWGR  420
QPAALRALSQ KLTRGFNEAL NGLADDGWSV IESDGVDDVC ISVNSSKVIG CNATFSSGLP  480
IVSTGVLCAK ASMLLQDVSP PSLLQFLREH RSQWADSNLD AFFASAMKPN FCNLPMSRLG  540
GFSGQVILPL AHTFEPEEFL EVIKLGNASN YQDTLVHRDL FLLQMYNGVE ESSAGTCSEL  600
IFAPIDASFS DDSPLLPSGF RIIPIDSPLD TSSPNCTLDL ASTLEAATPR SRISGVNGGG  660
GTCAAAAASS SSKAVMTIAF QFAFDGHLQD SVAAMARQYM RNIISSVQRI AVALSSSRLV  720
PPGAAAAAAQ LSPVTPEAAT LPRWICQSYR FHFGAELIKS VDANSSNESI LKAVWHHPSA  780
ILCCSLKAMP VFTFANQSGL DMLETTLVAL QDMTLEKVFD DQGRKNLCTE LPNIMEQGMA  840
CMEGGVCVSS VGRAASYEKA VAWKVVDGDG GGAHCISFMF INWTFL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.265651e-146callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329802161e-146
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and leaf blades. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3742070.0AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624690.10.0homeobox-leucine zipper protein HOX29
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLA0A0E0FHY70.0A0A0E0FHY7_ORYNI; Uncharacterized protein
STRINGOBART01G06400.30.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Agalou A, et al.
    A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members.
    Plant Mol. Biol., 2008. 66(1-2): p. 87-103
    [PMID:17999151]