 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
BGIOSGA001546-PA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
| Family |
LBD |
| Protein Properties |
Length: 243aa MW: 25786 Da PI: 9.7945 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA001546-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 99.7 | 2.8e-31 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88
+C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +l+ll+a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++q+q +
BGIOSGA001546-PA 4 SCNGCRVLRKGCSEGCTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAGPDHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGQWQAC 96
6******************************************************************************************** PP
DUF260 89 qlkaelallk 98
q+++e++l +
BGIOSGA001546-PA 97 QAAVEAVLKG 106
****998765 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 243 aa
Download sequence Send
to blast |
MRMSCNGCRV LRKGCSEGCT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAGPDH 60
LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GQWQACQAAV EAVLKGDPVV QVSSEAAAAA 120
QATPPLRAYD IRHVAKDAEA DAAANLLRVA RGGRTRFKRA SSSSNSKHGA KLAGAAAAKR 180
AASPSSSSPT HETEPXXXXX XXXXXXXXXX XXXSSSSVGL GSVPSCLHPV CPQPPRQEIG 240
HTY
|
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Os.22577 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
