PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001061-PA
Common NameOsI_03190
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 521aa    MW: 57571.2 Da    PI: 7.545
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001061-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM42.22.5e-1320230533128
               NAM  33 vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlsk.kgelvglkktLvfykg.rapk 115
                       +i+e+d+y+++P dL +      + +++++ wyfFs  +    +g rk r+++  +g W++    k+vl++ +g+  g ++++ f ++ ++ +
  BGIOSGA001061-PA 202 IIHEADVYSADPADLTRgfapavARSSGDEAWYFFSAVRGL--KGGRKARTVDdgAGCWHSEAGAKPVLAAsSGRRLGHRQSFSFITKdDDGQ 292
                       69*************8557777544558889*****98775..588999976644788**9999999998868889**********5436667 PP

               NAM 116 gektdWvmheyrl 128
                        +++ W+m e +l
  BGIOSGA001061-PA 293 RVRSGWLMVELSL 305
                       789*****99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.973171321IPR003441NAC domain
SuperFamilySSF1019411.16E-20200321IPR003441NAC domain
PfamPF023651.5E-6213304IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MAGEMPDADG KPRSASSGFQ PSAPPQPQAQ QYQYGTFGAP SSAPGEVPQP AVGFPQPAPP  60
PGLRHYPQPP PPSYAVYPPL PPQTYPAAAP YYAQGYQAVQ GYIPVVEGRP VRMRRLPFCG  120
LGMGWFLFII GFFLAAIPWY IGAFVLICVR VHDYRRNQDM LLALLRLRLL ALLSCLVSPE  180
EKRFGEPAYR NPPPSSSSCG FIIHEADVYS ADPADLTRGF APAVARSSGD EAWYFFSAVR  240
GLKGGRKART VDDGAGCWHS EAGAKPVLAA SSGRRLGHRQ SFSFITKDDD GQRVRSGWLM  300
VELSLDVDEE EQLVLSKVYF SPRAPGAKKP TTAAAMSRHK RKLSTTDIAS PPRRQRRHRV  360
VPSSPPEEPN TSPSPAAAPP DQQEGGDDDP DRGSISWWLR RVFGLTATFT EEESIELNPW  420
LKDILRPFPP PLPPTPPPPC PSPRRKLIDM PEIREFIMRG SYLGGGPAPP RYECDHPAMV  480
MTGGDDQQQL DEQRRDDVGD DRAHYDRVDG QLQFERHYLQ L
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.142020.0leaf| root| seed| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037600.0AP003760.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0063G05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638896.10.0uncharacterized protein LOC107276912
TrEMBLA2WTK30.0A2WTK3_ORYSI; Uncharacterized protein
STRINGOS01T0667000-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.15e-08NAC domain containing protein 63