PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA000316-PA | ||||||||
Common Name | OsI_04803 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | AP2 | ||||||||
Protein Properties | Length: 694aa MW: 71702.2 Da PI: 7.067 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.5 | 4.4e-15 | 281 | 340 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g BGIOSGA000316-PA 281 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 340 57*******************666664478446*************************98 PP | |||||||
2 | AP2 | 46.7 | 7.9e-15 | 383 | 434 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g BGIOSGA000316-PA 383 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 434 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.68E-17 | 281 | 350 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.8E-12 | 281 | 340 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.13E-20 | 281 | 350 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-15 | 282 | 349 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.23 | 282 | 348 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-29 | 282 | 354 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 283 | 294 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-17 | 383 | 444 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.8E-10 | 383 | 434 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.02E-23 | 383 | 444 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.1E-18 | 384 | 443 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 384 | 448 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 384 | 442 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 424 | 444 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence Send to blast |
MATMNNWLAF SLSPQDQLPP SQANSTLISA AATTTTAGDS SAGDVCFNIP QDWSMRGSEL 60 SALVAEPKLE DFLGGISFSE QHHHGGKGGV IPSSAAACYA SSGSSVGYLY PPPSSSSLQF 120 ADSVMVATSS PVVAHDGVSG GGMVSAAAAA AASGNGGIGL SMIKNWLRSQ PAPQPAQALS 180 LSMNMAGTTT AQGGGAMALL AGAGERGRTT PASESLSTSA HGATTATMAG GRKEINEEGS 240 GSAGAVVAVG SESGGSGAVV EAGAAAAAAR KSVDTFGQRT SIYRGVTRHR WTGRYEAHLW 300 DNSCRREGQT RKGRQVYLGG YDKEEKAARA YDLAALKYWG PTTTTNFPVN NYEKELEEMK 360 HMTRQEFVAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE 420 AAEAYDIAAI KFRGLNAVTN FDMSRYDVKS ILDSAALPVG TAAKRLKDAE AAAAYDVGRI 480 ASHLGGDGAY AAHYGHHHHS AAAAWPTIAF QAAAAPPPHA AGLYHPYAQP LRGWCKQEQD 540 HAVIAAAHSL QDLHHLNLGA AAAAHDFFSQ AMQQQHGLGS IDNASLEHST GSNSVVYNGD 600 NGGGGGGYIM APMSAVSATA TAVASSHDHG GDGGKQVQMG YDSYLVGADA YGGGGAGRMP 660 SWAMTPASAP AATSSSDMTG VCHGAQLFSV WNDT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.65151 | 0.0 | callus |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116013843 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK240892 | 0.0 | AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634444.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT1 | ||||
TrEMBL | B8A7R2 | 0.0 | B8A7R2_ORYSI; Uncharacterized protein | ||||
STRING | ORGLA01G0345800.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-119 | AINTEGUMENTA-like 5 |