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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA000302-PA | ||||||||
Common Name | OsI_04836 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 673aa MW: 75411 Da PI: 6.1007 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.1 | 9.1e-15 | 82 | 169 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffk++ +++++ + +p +fa+++ + + + led g +W+v+l +++ ++ GWk+Fv ++++ +g+f+vF+ + rs f + BGIOSGA000302-PA 82 FFKIM--VGYFSEN-MDIPLPFARTITDMT--GSNVYLEDAYGLRWRVRL--YLHDDVLSFGHGWKNFVLDHDISVGEFLVFRQIARSVF--T 165 66666..5566666.9**********6443..337***************..999999*************************9998999..8 PP EEEE CS B3 94 vkvf 97 v++f BGIOSGA000302-PA 166 VQIF 169 8877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.77E-22 | 76 | 174 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-19 | 77 | 172 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.957 | 79 | 172 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.98E-17 | 80 | 169 | No hit | No description |
Pfam | PF02362 | 9.3E-12 | 82 | 169 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.0E-13 | 82 | 172 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.9E-12 | 576 | 669 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.292 | 576 | 671 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.24E-10 | 577 | 669 | No hit | No description |
SuperFamily | SSF101936 | 5.49E-14 | 579 | 671 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0024 | 579 | 671 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-7 | 604 | 667 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MVELIKVPKI EQEEGNADSH GKEKADVVHE EKTEKVKRRR KRVSDPQRKK ACVDCTKRCI 60 RIHGMASSSS EKARPTPTLP SFFKIMVGYF SENMDIPLPF ARTITDMTGS NVYLEDAYGL 120 RWRVRLYLHD DVLSFGHGWK NFVLDHDISV GEFLVFRQIA RSVFTVQIFA ISACERIHLC 180 ERNKRQSRKR KPGRKTGYPA DNQMVKVSSK DVVKRRKKQR TDEQIYDLDP RQHDMPVRVC 240 IDSGSELRCS ESSVKELDAA PDKSHAVVQV PATECNADPS YNAAGMKTIK NLEAIGASSS 300 TKDVTWDANK SEDYPSFSYP ESSNVMTADK ESERSHQDRP MQLYCELGLE DGNAETENCE 360 NSNVLENAEL RTPLAMMDLN EVGIDDIFLS ADIYEFDSDF CSPEAFSVDV NTEGLVANGR 420 TPGDCFGVPE TSRCLENKQM TDVPRTSTDD GSIAVHGIDI NALPSNTCPD IGQGNTYPDI 480 DAAPDDCKKD KDVLHSECNK VAQKAHYSVK QDITKDGPRQ IAAEIMSSDP KTCELTYVRK 540 NSVQPGTSSV SQWNNSKGQE SGGTKSCVVL AVAANSKKFC ITIPPPDQTW LELPRRLPVL 600 PRTKKQARKI LILKDPSMRF WPVLYQCTPK FNGFIAGWAD ISRENNLREG DTCEFELCSN 660 SELSFQVLVP NLQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 49 | RRRKRVSDPQRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.51723 | 0.0 | callus |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32973548 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063530 | 0.0 | AK063530.1 Oryza sativa Japonica Group cDNA clone:001-117-B02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645658.1 | 0.0 | B3 domain-containing protein Os01g0905400 | ||||
Swissprot | Q5N6V0 | 0.0 | Y1054_ORYSJ; B3 domain-containing protein Os01g0905400 | ||||
TrEMBL | A2WY33 | 0.0 | A2WY33_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA01G46020.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11461 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 3e-11 | B3 family protein |
Publications ? help Back to Top | |||
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