PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA000269-PA
Common NameOsI_04895
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 479aa    MW: 51059.4 Da    PI: 4.3339
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA000269-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.91.9e-161152344
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                      i n   r +t+ kR++g++KKA EL +LCd+ vav+ ++++g
  BGIOSGA000269-PA 11 IANPQTRATTYKKRKAGLIKKAGELATLCDIPVAVVCAGPDG 52
                      789999**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.778152IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-19160IPR002100Transcription factor, MADS-box
CDDcd002661.24E-26281No hitNo description
SuperFamilySSF554556.02E-21383IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-7323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MARRKTSIAL IANPQTRATT YKKRKAGLIK KAGELATLCD IPVAVVCAGP DGGAPTVWVS  60
PEGGDAIERY RALPAEKRAR HTHVAYLQEE LDKERAKLAR LRQKGRPGEL DPPDAVLDGM  120
SQDELQQLLA SIDATLLATA KRREALGLLP GADDDADGGG RRRDADVAGT NSVGVHGYQH  180
QEVHAPATCD PFHPYNAGVT LMQPGHNNAQ YMGGHGAVDM SGYQLQMQMP GNGSNNHSRL  240
AWGGFQPCNA TFVQPVYGNL QCWYNNVVDG NGEPCDAVVP SAGDPYMDIA GNDVYGNQMQ  300
PAPAANGGWH DPGTWGYDGG EPCKAIVPSS GDPYMGIGVY GNQMQPAPAP AANGCWHNPA  360
GTWGNDGEPC NAIVPSAGHP YIDIECDIDG NYIDTTVFDY QTTSTSDNFM DAPVQFIATG  420
SDESIVTNVT GCDETEFSID DLLQCSDASQ HSSGLEELHY LSDLADGFDF GCNFDVLLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKTSIALIANPQTRATTYKKRK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329960370.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640115.20.0uncharacterized protein LOC4324340
TrEMBLA2WY910.0A2WY91_ORYSI; Uncharacterized protein
STRINGONIVA01G46660.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31630.13e-17AGAMOUS-like 86