PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.ZJ03A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | G2-like | ||||||||
Protein Properties | Length: 273aa MW: 29880.2 Da PI: 6.7141 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.1 | 1.7e-27 | 111 | 161 | 1 | 52 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQk Araip.ZJ03A 111 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQK 161 59*******************.*****************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.54E-16 | 108 | 161 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.8E-26 | 110 | 161 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.2E-22 | 112 | 161 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-6 | 114 | 161 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MREEDSNWFA RWEDELPPPE ELMPLSQTLI TPDLAIAFDI PSPHTPTAAA TATPTTPNHH 60 LHHHQQPQQP QPPSNPSPSH QQQPSSGGDF ADSGDLGSGA AGEEPARTLK RPRLVWTPQL 120 HKRFVDAVAH LGIKNAVPKT IMQLMSVDGL TRENVASHLQ KPNSEHFLPF VSVPAMHHQQ 180 HHHQMAAAAA GAAAMQHVQL QQQFHRQASG HFGSPPNGHF EHAFMSRQQP PPQNQQQQFN 240 RMGGGVAGYA EDMESANASG ARKVLTLFPT GDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 7e-27 | 111 | 161 | 1 | 51 | Transcription factor LUX |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.ZJ03A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016181526.1 | 1e-122 | transcription factor MYBC1 | ||||
Refseq | XP_025681635.1 | 1e-122 | transcription factor MYBC1 | ||||
TrEMBL | A0A445B2I9 | 1e-120 | A0A445B2I9_ARAHY; Uncharacterized protein | ||||
STRING | XP_007162050.1 | 2e-95 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8542 | 30 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 3e-40 | G2-like family protein |