PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.YS3WM | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 229aa MW: 26660 Da PI: 6.0258 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 121.6 | 6.8e-38 | 52 | 171 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++Pw+L+ ++ ae k+wy++s+r + +r+t++gyWkatg +++v+++ ++ Araip.YS3WM 52 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWELDGRALAEGKQWYYYSRRTQ--------SRVTENGYWKATGMEEPVMTSsTN 140 79*************************999.99**************97777889*******9854........799****************98677 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + vg+kk +vf+ g++p++ kt+W+m+ey l Araip.YS3WM 141 KRVGIKKYFVFHLGESPSAIKTNWIMQEYCL 171 88***************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-48 | 47 | 198 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.531 | 52 | 199 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-22 | 53 | 171 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
AWVSRQHPYY KYLSFSICTI NTTHLHHYSN LTHSLLLFSL PIFLMGDNNV NLPPGFRFYP 60 TDEELVVHFL HRKAALLPCH PDVIPDLDLY PYDPWELDGR ALAEGKQWYY YSRRTQSRVT 120 ENGYWKATGM EEPVMTSSTN KRVGIKKYFV FHLGESPSAI KTNWIMQEYC LSDYSASSSR 180 SSKRKSDYSK WVICRVYERN GDDDDGTELS CLDEVFLSLD DLDEISLPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-40 | 48 | 200 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-40 | 48 | 200 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-40 | 48 | 200 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-40 | 48 | 200 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-40 | 48 | 200 | 16 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-40 | 48 | 200 | 16 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-40 | 48 | 200 | 16 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-40 | 48 | 200 | 16 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-40 | 48 | 200 | 16 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-40 | 48 | 200 | 16 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-40 | 48 | 200 | 16 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-40 | 48 | 200 | 16 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-40 | 48 | 200 | 13 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-40 | 48 | 200 | 13 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.YS3WM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847238 | 9e-49 | KC847238.1 Gossypium hirsutum NAC domain protein NAC61 mRNA, complete cds. | |||
GenBank | KJ801818 | 9e-49 | KJ801818.1 Gossypium hirsutum NAC transcription factor (XND1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016179211.1 | 1e-137 | NAC domain-containing protein 104-like | ||||
Refseq | XP_025680369.1 | 1e-137 | NAC domain-containing protein 104 | ||||
Swissprot | Q8GWK6 | 4e-90 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A444WZD3 | 1e-136 | A0A444WZD3_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA08G19300.1 | 1e-108 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 1e-86 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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