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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.YR6Y7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 29147.3 Da PI: 6.7515 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.2 | 1.3e-12 | 53 | 102 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +hn+ Er RR++iN ++ Lr++lP a + kK+s ++ ++ +YI +Lq Araip.YR6Y7 53 NHNASERHRRKKINALYSSLRSILPVA--DQTKKMSIPATISRVLKYIPELQ 102 8*************************6..48888***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.5E-16 | 49 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.624 | 49 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.28E-10 | 50 | 106 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.7E-12 | 51 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.3E-10 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-10 | 55 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MSMILALSSP TSMFPNNMEW PLELEEEELS HSHEYFNSEE YPLLSSSMAK KFNHNASERH 60 RRKKINALYS SLRSILPVAD QTKKMSIPAT ISRVLKYIPE LQQQVEELIK KKEELLLRIS 120 RQGDINNDDA AMNKKGHHHH NSSAFLVSSS RISDSEVSIH MISSYGIQKC QVSEILVCLE 180 NHYALQLLNA SSFDTFGGRL FYNLHFQMEM AHTLDTEVLS EKILSICEKH QRIYLCNVNI 240 IIFSFFSHSI LID |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.YR6Y7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016205074.1 | 1e-171 | transcription factor bHLH100 isoform X1 | ||||
Refseq | XP_025663674.1 | 1e-171 | transcription factor bHLH100 | ||||
TrEMBL | A0A444YHT5 | 1e-170 | A0A444YHT5_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA03G28630.1 | 2e-66 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2402 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41240.1 | 7e-28 | basic helix-loop-helix protein 100 |