PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.YNQ3G
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 405aa    MW: 46520.4 Da    PI: 7.0794
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.YNQ3GgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.95.8e-1227104990
         FAR1   9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                   +GFs+r++ ++++   +ei+++  +Cs+e k +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++
  Araip.YNQ3G  27 AAGFSTRVRCTNRK--GNEIKNQLITCSRERKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCC 104
                  69******988776..8889************9998777...8999**************998879**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-927104IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.085268304IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDHSTSDCQL NPGEVDYEFE SNEVPEAAGF STRVRCTNRK GNEIKNQLIT CSRERKWKSK  60
ISPTEKTNPT AGLNCPARIY IHTLKDVGAW IISKVVLDHS HPCCLSKTEM LKQHRELSMS  120
IRRTIENNEE ADLYEDRHIW VPIYLDHHFW AGMRSTQTSE SMHSFFNKYI TRNSSLIQFV  180
KQYDNCLGSR EQAERESDAA DFHTVIPCAT KSSIEAQFQD AYTHQKFREV QAQFRGKANC  240
ITRLTNSALG YSVYEVGEQV SSSIFNKFVV TYDSVAAEVK CQCLLFESRG ILCCHAPSVL  300
SFEQVSQVSP RYILERWSKK VKRRHTHIKS SHDEPLMEPR SKRFDQLVFC SQNICEFASE  360
SEELTAILHR AYDNVMAEME SLKAKRKGTS SLSHEDSNLE SVNEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.YNQ3G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.25e-31far-red elongated hypocotyls 3