PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.YK053
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 139aa    MW: 15074.1 Da    PI: 9.4384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.YK053genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.22e-05100124529
                  HHHHHHHHHHHHHHHHHHHHCTSCC CS
          HLH   5 hnerErrRRdriNsafeeLrellPk 29 
                  h+++Er R +ri +++  L+el+P+
  Araip.YK053 100 HSIAERLRKERIAERIRALQELVPS 124
                  99**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.04E-693127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.67495139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-696127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
PSSRGIYLRE ATAFQQSTEL GLSLDQGKGA DGAAAPGVGF LKPPEEASGS GKHFRDDVLD  60
ARAKNVFHGQ PMPTTIPETP HPPTMRPRVR ARRGQATDPH SIAERLRKER IAERIRALQE  120
LVPSVNKVCN CSNAVCDPI
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.YK053
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020979406.11e-84transcription factor UNE12-like
SwissprotO227683e-30UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A444Z5I74e-67A0A444Z5I7_ARAHY; Uncharacterized protein
STRINGevm.model.supercontig_52.974e-49(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.33e-27bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]