PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.YG26I
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 541aa    MW: 61568 Da    PI: 8.9112
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.YG26IgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR148.43e-15103185191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++  ++ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++     +  ++k++l+H+H+++p
  Araip.YG26I 103 KFYRNYAKAAGFSTRVQSTNRK--ENEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTL---NDIISKVVLDHSHPCCP 185
                  6****************98887..7779*************998877...8999**************999...568***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-12103185IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.124328364IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-4330361IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-4339366IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MFFVIYVSSS LCNSSFVFYL ICCFLKSKFE LVLKIMDDSS SDCQLNQGEV DYEFESNEVP  60
ETLGCRSELF WLSCCGSGPL SVIDDQFVPK VGMTFTTLED AGKFYRNYAK AAGFSTRVQS  120
TNRKENEIKN QLITCSREGK WKSKISPTEK TNPTAGLNCP ARIYIHTLND IISKVVLDHS  180
HPCCPSKAEM LKQHRELSMS IRRTIENNEE AGMRSTQRSE SMHSFFNKFI TRNSSLIQFV  240
KQYDNCLGSR EQAERESDAA DFHTVIPCAT KSSIEAQFQD VYTHQKFREV QAQFRGRANC  300
ITRLTNSALG YSVYKVGEQV SSSIFNKFVV TYDSVAAKVK CQCLLFESRG ILCRHALSVL  360
SFERVSQVSP RYILERWSKK VKRRHTHIKS SHDEPLLEPR SKRFDQLVFR SQNICEFASE  420
SEELTVILHR AYDNIMAEME SLKAKRKGTS SLSHEDANLE SVNELQSPPR IRTRGRPKNR  480
LGSKLDKQIA NATKKKKTKV LSEINLFDAA SVVHSNSSQY QGHVMNYQFR VPGAGDNSLV  540
V
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.YG26I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-28far-red elongated hypocotyls 3