PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.YD644

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 363aa MW: 41792.4 Da PI: 9.2156

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.YD644	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.9	7.8e-19	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Araip.YD644 51 KFYRNYAKAAGFSTRVRSTNRK--RNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137 6**************98887..5569*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-16	51	137	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MDDSTSDCQL NQGKVDYEFE SNEVPEPLSV DDDQFVPKVG MNFITLKDAG KFYRNYAKAA 60 GFSTRVRSTN RKRNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG 120 AWIISKVVLD HSHPCCPSKP EMLKQHRELS MSIHRTIENN EEAGMRSTQR SESMHSFFNK 180 FITRNSSLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC ATKSSIEAQF QDVYTHQKFR 240 EVQAQFRGKA NCITRLTNSA LGYSVYKVGE QVFSSIFNKF VVTYDSVAAE VKYQCLLFES 300 RGILCRHALS VLSFERVSQV SPRYILERWS KKVKRRHTHI KSSHDEPLLE PRSKRFDQLI 360 FCL

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MDDSTSDCQL NQGKVDYEFE SNEVPEPLSV DDDQFVPKVG MNFITLKDAG KFYRNYAKAA  60
GFSTRVRSTN RKRNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKP EMLKQHRELS MSIHRTIENN EEAGMRSTQR SESMHSFFNK  180
FITRNSSLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC ATKSSIEAQF QDVYTHQKFR  240
EVQAQFRGKA NCITRLTNSA LGYSVYKVGE QVFSSIFNKF VVTYDSVAAE VKYQCLLFES  300
RGILCRHALS VLSFERVSQV SPRYILERWS KKVKRRHTHI KSSHDEPLLE PRSKRFDQLI  360
FCL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.YD644

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	1e-132	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A444YSY6	0.0	A0A444YSY6_ARAHY; Uncharacterized protein
STRING	XP_004490233.1	5e-51	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	6e-27	far-red elongated hypocotyls 3