PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.Y0NUV

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 628aa MW: 71852.9 Da PI: 9.534

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.Y0NUV	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.7	5.2e-20	145	235	1	90
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY++YAk+vGF +r+++++ k+++ +++ + Cs+eg+re++ k+ + r + t gCka++ v +++ +++w+v+klel+H+H+++ Araip.Y0NUV 145 EFYSNYAKKVGFVTRIRNTNFDktrKDSKIPINQSLHCSREGYRESQVKA---ATRVKRITTAGCKARMYVMLDRlKDNWMVSKLELKHTHPCF 235 6***********9998876645455666799*********9998...888889999***************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-17	145	234	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.186	400	438	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.0E-4	412	437	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence Send to blast
YGTFQVTETP TLPFNGDCAY TRIPFLHRGT VQVTGTPTLP YTVIVPSLGS HLVAPLVPLN 60 RSVTSMVYVS PLKSSGQTTI SVEENWHATL FSSTIFSKGK KSVNVIQVED DAMAVNHELS 120 DHTGISIDEI PYVGLRFVSL QRAQEFYSNY AKKVGFVTRI RNTNFDKTRK DSKIPINQSL 180 HCSREGYRES QVKAATRVKR ITTAGCKARM YVMLDRLKDN WMVSKLELKH THPCFAKQAV 240 HYTEYRELTM HAKCVIQNND EAGIRSVLKI LSSLNLYDER RMWVLIYFQG MRSTQRSESM 300 HAFFGGYLYC KSRLGQFVHE YDNKELEDDA ADSKGVVPCS SSSTIERQFQ REYTTSKFRE 360 VQQEFRKKRD CLVRGATQEG DLFRVIVKEQ YLLYGEPRSW TNIVEFDPST HTIRCECNMF 420 ASRGILCCHC LAVYFYYGVD RVPSCYVLPR WSKNVQRKHT FIKSSHDEKR SDESHNLFRG 480 LCSHFFNVAQ KFVTCEEETT AMLHSDLDEL RSKLFDYRVN LGYRSVPTTQ NSMVTQFDPA 540 CGASSIQGPL KVATKGRPRL KRLGSELDTS IKRSMRRKKN NPPQENNRAI NPNIVAISAV 600 RTNESQGHGG LRFLILRLLS QKDVSYAS

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence Send to blast

YGTFQVTETP TLPFNGDCAY TRIPFLHRGT VQVTGTPTLP YTVIVPSLGS HLVAPLVPLN  60
RSVTSMVYVS PLKSSGQTTI SVEENWHATL FSSTIFSKGK KSVNVIQVED DAMAVNHELS  120
DHTGISIDEI PYVGLRFVSL QRAQEFYSNY AKKVGFVTRI RNTNFDKTRK DSKIPINQSL  180
HCSREGYRES QVKAATRVKR ITTAGCKARM YVMLDRLKDN WMVSKLELKH THPCFAKQAV  240
HYTEYRELTM HAKCVIQNND EAGIRSVLKI LSSLNLYDER RMWVLIYFQG MRSTQRSESM  300
HAFFGGYLYC KSRLGQFVHE YDNKELEDDA ADSKGVVPCS SSSTIERQFQ REYTTSKFRE  360
VQQEFRKKRD CLVRGATQEG DLFRVIVKEQ YLLYGEPRSW TNIVEFDPST HTIRCECNMF  420
ASRGILCCHC LAVYFYYGVD RVPSCYVLPR WSKNVQRKHT FIKSSHDEKR SDESHNLFRG  480
LCSHFFNVAQ KFVTCEEETT AMLHSDLDEL RSKLFDYRVN LGYRSVPTTQ NSMVTQFDPA  540
CGASSIQGPL KVATKGRPRL KRLGSELDTS IKRSMRRKKN NPPQENNRAI NPNIVAISAV  600
RTNESQGHGG LRFLILRLLS QKDVSYAS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.Y0NUV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025673501.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A445E201	0.0	A0A445E201_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17996	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-20	FAR1-related sequence 5