PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.XJ1LT

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 304aa MW: 35591.4 Da PI: 8.6712

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.XJ1LT	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.9	5.8e-17	73	161	2	89
FAR1 2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 f ++YAk+vGF +r+++ + k+ + +++t Cs+eg+re++ k+ + + t gCka++ v +++ +++w v+klel+H+H++ Araip.XJ1LT 73 FNSNYAKKVGFVTRIRNINFDktkKELKVPINQTIHCSREGYRESRVKA---ATWVKRITTAGCKARMYVMLDRqNDNWLVSKLELKHTHTC 161 7789*********99877733344556689**********999...777888999******9999*************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.8E-15	73	161	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MDTPILEEAS YDIAYDMSEH FNSTDGKESE DAIQKKDDAT ISNNEFPDHT GIPMEEIPYV 60 GLRFDSLQRA QEFNSNYAKK VGFVTRIRNI NFDKTKKELK VPINQTIHCS REGYRESRVK 120 AATWVKRITT AGCKARMYVM LDRQNDNWLV SKLELKHTHT CSAEQVVHYS EYRKLTMLAK 180 CTFTTIVECG FQYIFKVNFG LREYTTSKFR KVQHEFSKRG DCLVRGVTQE GDLFLVTVNE 240 QYLLYGEPRS WKYSVEFDPK THKVRYECKI FGSSDTVPSC YVIPRWSKNV QRKHTFIKSI 300 HDEK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.XJ1LT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015949654.1	1e-100	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444YN43	1e-168	A0A444YN43_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14126	2	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	8e-11	FAR1 family protein