PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.XCE6D
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 335aa    MW: 38487.6 Da    PI: 8.2052
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.XCE6DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR126.12.9e-0851102157
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtrae 57 
                  +fY+ ++k  GF vrk  s k   +g+ ++++f C+keg+re+++ +    r  r+ 
  Araip.XCE6D  51 EFYRGFGKLDGFGVRKGDSGKD-CEGNLVRYRFFCNKEGFRERKHYD----RVDRMR 102
                  6*****************9998.7788****************9988....333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.7E-65197IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEVSLSQEDA DRGGSDGDAY DVENFELEDL AGLSVNDILK KVWDSVDNAY EFYRGFGKLD  60
GFGVRKGDSG KDCEGNLVRY RFFCNKEGFR ERKHYDRVDR MREIEGVGAL ILISTRRIMN  120
TMIYTLEEYE DPDVHIMSSF GRSTRKLSFQ CNFWKKQGYP CKHMFFVMKA EHIKEIPEKI  180
VLHRWRTDAK SAEQYIENWG DYSERGVILR HGALHSASQW LFFLGAQRLS MFQKAMRGIE  240
SLCKELEMDC RAFGSSIRRN EKRLVKAIRW RRCTGCKGIG HNKRNCPMKG GNRQNPNQAD  300
KCGGNNGPGL MSNNDWESIV GDNLCVEPGG KHNAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.XCE6D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025669842.11e-133protein FAR-RED ELONGATED HYPOCOTYL 3-like
RefseqXP_025669843.11e-130protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444Y6C91e-132A0A444Y6C9_ARAHY; Uncharacterized protein
TrEMBLA0A444Y6K81e-128A0A444Y6K8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1402023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.28e-07far-red elongated hypocotyls 3