PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.X784U

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 413aa MW: 45101.1 Da PI: 8.154

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.X784U	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.6	2.5e-09	294	341	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Araip.X784U 294 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 341 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.45E-9	288	343	No hit	No description
SuperFamily	SSF47459	9.03E-15	288	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.5E-15	290	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	290	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-6	294	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-8	296	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MEIHQQNNVA NCSPENNNHQ NQDSFYNNNN TDHNNLQFDS SALSSMVSSP STAAPNFNMI 60 QNDNSFVIRE LIGKLGTIGG SSAEISPHSQ TVALYNNNNT TPSSSCYSTP LNSPPKLNMP 120 KPPPPSSSMA LNSATVAEFS ADPGFAERAA KFSCFGSRSF NGRTTTTTTT TTTSPLVMIN 180 NHNNNNGAEL THQRSNPIHR VSSSPSLKSL GSQMEKICSS PLEMAANSSQ EESTISEQNP 240 NVEGAALKIA SSSDMSSRKR KGSSRAKAKD STKPPEPPKD YIHVRARRGQ ATDSHSLAER 300 VRREKISERM KLLQDLVPGC NKVTGKALML DEIINYVQSL QRQFLSMKLA SVNTRMDLSI 360 ENIVPKDYPL TFCEDDLHTI VQMGFGQTSN RTTPIHSPSF DGSNQVSQMK VEL

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MEIHQQNNVA NCSPENNNHQ NQDSFYNNNN TDHNNLQFDS SALSSMVSSP STAAPNFNMI  60
QNDNSFVIRE LIGKLGTIGG SSAEISPHSQ TVALYNNNNT TPSSSCYSTP LNSPPKLNMP  120
KPPPPSSSMA LNSATVAEFS ADPGFAERAA KFSCFGSRSF NGRTTTTTTT TTTSPLVMIN  180
NHNNNNGAEL THQRSNPIHR VSSSPSLKSL GSQMEKICSS PLEMAANSSQ EESTISEQNP  240
NVEGAALKIA SSSDMSSRKR KGSSRAKAKD STKPPEPPKD YIHVRARRGQ ATDSHSLAER  300
VRREKISERM KLLQDLVPGC NKVTGKALML DEIINYVQSL QRQFLSMKLA SVNTRMDLSI  360
ENIVPKDYPL TFCEDDLHTI VQMGFGQTSN RTTPIHSPSF DGSNQVSQMK VEL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.X784U

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016175918.1	0.0	transcription factor bHLH78
Refseq	XP_025675988.1	0.0	transcription factor bHLH78
Swissprot	Q9SRT2	1e-82	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A444XFC0	0.0	A0A444XFC0_ARAHY; Uncharacterized protein
STRING	XP_004492265.1	1e-112	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2530	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-63	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]