PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.X63FE | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 153aa MW: 17491.3 Da PI: 9.2413 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 25.7 | 3.7e-08 | 11 | 81 | 19 | 91 |
FAR1 19 skkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 ++++++ ++i+++ vC +eg+ +++ + + +t+++ +C ak+ v +k + w ++k+ l+H+ +++p Araip.X63FE 11 KNTTRDGDKIKNQLIVCLREGRWKSKISP---TLKTNPSAGLNCPAKIYVLIMKdVSLWTISKVILNHSYPCCP 81 344567778888889*******9998776...999***************9999899***********998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.2E-6 | 8 | 81 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MIFKTLEEAG KNTTRDGDKI KNQLIVCLRE GRWKSKISPT LKTNPSAGLN CPAKIYVLIM 60 KDVSLWTISK VILNHSYPCC PDQAKMLKQH RELSMFVRRT IETHEEAGIR SSKTYQSFMV 120 AAGSHRELAC TVFGSPDLIV SVWYTELYED RHI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.X63FE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016177749.1 | 5e-77 | uncharacterized protein LOC107620038 | ||||
TrEMBL | A0A445EJ10 | 1e-76 | A0A445EJ10_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |