PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.X5VKC

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 473aa MW: 54246.5 Da PI: 9.6196

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.X5VKC	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.8	1.8e-18	11	97	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Araip.X5VKC 11 KFYRNYAKAAGFSTRVQSTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 97 6**************98887..8889*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.2E-16	11	97	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.902	260	296	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MTFTTLEDAE KFYRNYAKAA GFSTRVQSTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN 60 PTAGLNCPAR IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN 120 EEADLYEDRH IWVPIYLDHH FWAGMRSTQR SESMHSFFNK FITRNSSLIQ FVKQYDNCLG 180 SREQEERESD AADFHTVIPC ATKSSIEAQF QDAYSHQKFR KVQAQFRGKA NCITRLKNSA 240 LGYSVYEVGE QVSSSIFNKF VVTYDSVAAE VKCQCLLFES REILCRHALS VLSFEQVSQV 300 SPRYILERWS KKVKRRHTHI KSSHDEPLME PRSKRFDQLV FRLQNICEFA SESEELTAIL 360 HRAYDNVMAE MESLKAKRKG TSSLSHEDAN LESVNELQSP PRIRTRGRPK NKLGSKLDKQ 420 IANATKKKKT KVLNEINVFD AASAVHSNSS QYQGHVMNYQ FRVPAAGDNS LGV

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MTFTTLEDAE KFYRNYAKAA GFSTRVQSTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN  60
PTAGLNCPAR IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN  120
EEADLYEDRH IWVPIYLDHH FWAGMRSTQR SESMHSFFNK FITRNSSLIQ FVKQYDNCLG  180
SREQEERESD AADFHTVIPC ATKSSIEAQF QDAYSHQKFR KVQAQFRGKA NCITRLKNSA  240
LGYSVYEVGE QVSSSIFNKF VVTYDSVAAE VKCQCLLFES REILCRHALS VLSFEQVSQV  300
SPRYILERWS KKVKRRHTHI KSSHDEPLME PRSKRFDQLV FRLQNICEFA SESEELTAIL  360
HRAYDNVMAE MESLKAKRKG TSSLSHEDAN LESVNELQSP PRIRTRGRPK NKLGSKLDKQ  420
IANATKKKKT KVLNEINVFD AASAVHSNSS QYQGHVMNYQ FRVPAAGDNS LGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.X5VKC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A850	0.0	A0A445A850_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-34	far-red elongated hypocotyls 3