PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Nin-like

Protein Properties

Length: 199aa MW: 23612 Da PI: 5.0787

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.X4GVE	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78.3	8.7e-25	90	140	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++e++ ++++k+F+lpi++AA++++++lT+LKr+CR++ IkRWPhRkiksl Araip.X4GVE 90 KSELEYDEIKKHFDLPITEAASKMNIGLTLLKRRCRELSIKRWPHRKIKSL 140 67899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.847	81	162	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-21	93	140	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MEFFNNELDS FSNDIDKIME ISPMDDFDDW APLLTYKSTQ KLFLNDLPEV DNDFDDLPPL 60 DDFKKEREEE DQEHKQLLQL APISTIKNKK SELEYDEIKK HFDLPITEAA SKMNIGLTLL 120 KRRCRELSIK RWPHRKIKSL HLLIQTLKEI GLDNEVEMLE QEINMLKQVP GTEITQETKK 180 LRQAYFKANY KRRKLLASN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.X4GVE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020962429.1	1e-143	protein RKD4
Refseq	XP_025667689.1	1e-143	protein RKD4-like
Swissprot	Q9LVU8	2e-35	RKD4_ARATH; Protein RKD4
TrEMBL	A0A445CAZ2	1e-142	A0A445CAZ2_ARAHY; Uncharacterized protein
STRING	AES72521	2e-51	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6898	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-37	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]