PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.WZG9Z | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C3H | ||||||||
Protein Properties | Length: 357aa MW: 39349.7 Da PI: 7.8356 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 47.5 | 2.9e-15 | 274 | 299 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tGtC+yGd C+FaHg Araip.WZG9Z 274 FKTELCNKWQETGTCPYGDHCQFAHG 299 79***********************8 PP | |||||||
2 | zf-CCCH | 18.3 | 4.1e-06 | 312 | 336 | 1 | 25 |
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykte Cr ++ G C+yG rC+F H Araip.WZG9Z 312 YKTEVCRMVLA-GvVCPYGHRCHFRH 336 9**********.66**********88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 23 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-19 | 269 | 306 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-11 | 270 | 305 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-9 | 273 | 300 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.004 | 273 | 301 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-12 | 274 | 299 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.33E-8 | 307 | 341 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-11 | 307 | 340 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-4 | 311 | 338 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.803 | 311 | 339 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MHNKEACSPS SNGGFGANTA TGCTQIQSNG GALASFYSAL LNDNPSLSAN SSSSLYPYSE 60 SGTQINSYDS CVIQKHQDMV NRHSMCLNRL VETSKEVESL RQENAHLRAV NKELQKQLNF 120 VIQASLENQF GGGSSCQGQT TPFDVVHGFR GFQIGEGKEN CGDWNSNNTN NNSNNNKEQE 180 VSDESPTSVI ENNGVEVERF SLPKSISVRS NGYLKMAQSA AAATATNTTT CRTKPTTRPR 240 VSSTPPDAVQ KVYVRGGKTE EEPLEMVVYN QGMFKTELCN KWQETGTCPY GDHCQFAHGI 300 GELRPVIRHP RYKTEVCRMV LAGVVCPYGH RCHFRHALTE QEKAISHPKS RTIKLER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 3e-21 | 274 | 340 | 4 | 70 | Butyrate response factor 2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00383 | ampDAP | Transfer from AT1G68200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.WZG9Z |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-102 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016177553.1 | 0.0 | zinc finger CCCH domain-containing protein 15 | ||||
Refseq | XP_025677351.1 | 0.0 | zinc finger CCCH domain-containing protein 15-like | ||||
Swissprot | Q9C9F5 | 8e-84 | C3H15_ARATH; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | A0A444XV28 | 0.0 | A0A444XV28_ARAHY; Uncharacterized protein | ||||
STRING | XP_007142975.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2778 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 8e-80 | C3H family protein |