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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.WU1YN | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 168aa MW: 19387.2 Da PI: 9.864 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.9 | 1.3e-11 | 22 | 71 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++Er+RR+++++ +++L +llP+ + p + l + +Av+YIksL+ Araip.WU1YN 22 ERKIIERNRRNKMKDLYSKLNSLLPSyS---PTEVLPLPDQIDEAVKYIKSLE 71 5689**********************55...8888****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.83E-12 | 17 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.011 | 18 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.02E-5 | 20 | 70 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.4E-11 | 20 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-8 | 22 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-4 | 24 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MDHHHQQQQQ QGSEPSTTTK VERKIIERNR RNKMKDLYSK LNSLLPSYSP TEVLPLPDQI 60 DEAVKYIKSL EKKVKMAKEK KERLLKGRNN NKRSRGFDEK NITKSPTIDV HEMGNSLLQV 120 VLTCGFENKF LFSEIIRILH EEKVEVVSAN SSSHGDSMIH VLHAEVIN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.WU1YN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020963768.1 | 1e-119 | transcription factor bHLH162-like | ||||
TrEMBL | A0A445BXX7 | 3e-93 | A0A445BXX7_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA12G12880.1 | 9e-61 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 3e-24 | bHLH family protein |