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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.WT9GE | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 135aa MW: 15777.1 Da PI: 10.4223 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 51.2 | 4.3e-16 | 48 | 134 | 2 | 87 |
FAR1 2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 Y++Y k+vGF r+++++ k++++ +++ Cs++g+re++ k+ + r + t Cka++ v +++ +++w+v+klel+H+H Araip.WT9GE 48 LYSNYVKKVGFMNRIRNTNFDktrKESRTPINQSIHCSRKGYRESRVKA---ATRVKRITTARCKARMYVMLDRqKDNWMVSKLELKHTH 134 7**********99988877664456777889***************999...7888889999*********9998*************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-13 | 48 | 134 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
GKESVDVIQL EDNATALNHE LSDHTGIPIE EIPYVGLRFV SLQQAQELYS NYVKKVGFMN 60 RIRNTNFDKT RKESRTPINQ SIHCSRKGYR ESRVKAATRV KRITTARCKA RMYVMLDRQK 120 DNWMVSKLEL KHTHL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.WT9GE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016172912.1 | 2e-96 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A444YDG0 | 8e-82 | A0A444YDG0_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14126 | 2 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 6e-11 | FAR1 family protein |