PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.WT3SV

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bZIP

Protein Properties

Length: 263aa MW: 29147.3 Da PI: 9.9845

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.WT3SV	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.5	6.9e-09	85	132	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +R+ ++ eLe+k+++L++e ++L +l+ Araip.WT3SV 85 KRAKRILANRKSAARSKERRACYVVELERKIQVLQTEATTLSAQLNLF 132 9*****************************************999865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.5E-12	81	145	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.933	83	146	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-7	85	131	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.6E-9	85	141	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.1E-8	85	144	No hit	No description
CDD	cd14703	4.74E-20	86	135	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MISFSHHRRT QSELHPVSDH QLPPLSPASA PAPIVDTNKT TVRPGHRRSN SADDASSSSL 60 LLEGIEAKKA MSPDKLAELW TVDPKRAKRI LANRKSAARS KERRACYVVE LERKIQVLQT 120 EATTLSAQLN LFQRDTTALN EALKKEVDRL KIATGEMVTR PNSNSLAMQR ASYSQAPFFS 180 LQLQHFASEL HTMQMPPLHP LLPNMSSPQP LIDVATPYNL SNMLPSDPVP VGQFQVLDIS 240 HPIPHVLIHD GPSISVNKIN NAF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.WT3SV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016178425.1	1e-168	transcription factor RF2b isoform X1
Refseq	XP_025683004.1	1e-168	transcription factor RF2b-like
Swissprot	Q6S4P4	8e-50	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A444X4T1	1e-167	A0A444X4T1_ARAHY; Uncharacterized protein
STRING	XP_004502831.1	1e-96	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	5e-37	basic leucine-zipper 52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]