PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.WH9WQ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 584aa    MW: 65733.8 Da    PI: 5.0163
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.WH9WQgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.8e-08479526347
                      SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                       WT++++++++d+vk  ++      W+ I + ++ ++++++++s+++++
      Araip.WH9WQ 479 LWTEDDEKKFKDVVKSNPPSlekcFWDQIFKSFP-TKSREDLVSYYFNV 526
                      5*****************88**************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101117.89165IPR001606ARID DNA-binding domain
SMARTSM005018.4E-5266IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.603.2E-13271IPR001606ARID DNA-binding domain
SuperFamilySSF467743.53E-15373IPR001606ARID DNA-binding domain
PfamPF013883.5E-8460IPR001606ARID DNA-binding domain
SMARTSM011895.5E-5381431IPR000949ELM2 domain
SMARTSM007172.7E-4476529IPR001005SANT/Myb domain
PfamPF002493.8E-6479526IPR001005SANT/Myb domain
CDDcd001673.32E-5480527No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016575Biological Processhistone deacetylation
GO:0048235Biological Processpollen sperm cell differentiation
GO:0000118Cellular Componenthistone deacetylase complex
GO:0048555Cellular Componentgenerative cell nucleus
GO:0048556Cellular Componentmicrosporocyte nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MMCSGEPLDL YKLFMVVKEK GGYDAVCKNM LWDLVAEEYG LGLNVGSSIE LVYSKHLSTL  60
ETWLKNVADS KFPECGLMDD RVSFGKKLME VQADFLLDVY SEEGAGDKIK TACDFVDGRK  120
LCGTNRVRGL NPELSGAKKI VDLNALDHKM NGPSIGSFCS NNFSNNSSDI QNHLNEIKTS  180
TVDISDEANI MPTLSEEGDS CDKNDGHDDD DDVMVLDPSD SCDKNDGHDD DDDDVMVLDP  240
STVNKESFGR KRKRESMSEM LSWLTGIAKN PCDPAVGSMP EKSKWKSYGS EEIWKQVLLF  300
RQATFFSSDH VSWQGQKMHP CMYDDQVGAN YNLRERLKSD KNLTCGVSSN MRGIQGGSER  360
NPSPHSEVEK LLLDQCSMVP IPVGPSHQAE VPEWTGVAIE SDSKWLGSQI WPSAEIKSKV  420
IERDPIGTGR KDSCGCEVQG SVECVRFHIA QKRAKVKLEL GVAFYLWNLH KTGEDVRRLW  480
TEDDEKKFKD VVKSNPPSLE KCFWDQIFKS FPTKSREDLV SYYFNVFILQ RRGYQNRNTP  540
DDIDSDDDES EYGPLKNAFG HQTHKSRNIT LLSPKKPKKT EHSK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.WH9WQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193941.10.0AT-rich interactive domain-containing protein 1 isoform X1
RefseqXP_016193943.10.0AT-rich interactive domain-containing protein 1 isoform X1
RefseqXP_020977494.10.0AT-rich interactive domain-containing protein 1 isoform X1
RefseqXP_020977495.10.0AT-rich interactive domain-containing protein 1 isoform X1
RefseqXP_025649457.10.0AT-rich interactive domain-containing protein 1 isoform X1
RefseqXP_025649458.10.0AT-rich interactive domain-containing protein 1 isoform X1
RefseqXP_025649459.10.0AT-rich interactive domain-containing protein 1 isoform X1
RefseqXP_029148150.10.0AT-rich interactive domain-containing protein 1 isoform X1
TrEMBLA0A444ZMM60.0A0A444ZMM6_ARAHY; Uncharacterized protein
STRINGXP_004492764.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43731724