PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

SBP

Protein Properties

Length: 298aa MW: 32451.1 Da PI: 9.4447

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.W5573	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.1	2.8e-39	38	106	9	77
---TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 9 adlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 dls+ak y++rhkvC +hsk+p+v+vsgl+qrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ Araip.W5573 38 LDLSDAKAYYSRHKVCAMHSKSPTVTVSGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPP 106 69*****************************************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	27.513	28	105	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.01E-35	38	109	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.4E-29	38	104	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	1.1E-28	38	92	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0048653	Biological Process	anther development
GO:2000025	Biological Process	regulation of leaf formation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MAPGGRTATN NHKNQPPSST VESLNGLKFG QKIYFEDLDL SDAKAYYSRH KVCAMHSKSP 60 TVTVSGLQQR FCQQCSRFHQ LPEFDQGKRS CRRRLAGHNE RRRKPPPSSN FLTSRYARLS 120 SSLFDDSGKG GSFVMEFASY PKLGLRNTVP NPRSSQPISG TLSWQGYSET SSDLFLQGSV 180 GGTSIPNVRH PPPSSESYAG VADSSCALSL LSSQTWGSSN MAPSLGLNNM LNFSGAPVTQ 240 LAASSHGESI HQVPNPWWCP NKVVPDLGLG QFSQLPNSQV PGEFDALEPG RRHHGNLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-29	39	104	19	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00307	DAP	Transfer from AT2G42200	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.W5573

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF312230	0.0	KF312230.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL9) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016207446.1	0.0	squamosa promoter-binding-like protein 17
Swissprot	A3C057	1e-53	SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBL	A0A444YH85	0.0	A0A444YH85_ARAHY; Uncharacterized protein
STRING	GLYMA19G32800.1	1e-134	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4208	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	8e-47	squamosa promoter binding protein-like 9