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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.W4GJ9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 258aa MW: 28944.7 Da PI: 7.4676 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.3 | 1.2e-12 | 77 | 124 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h+e+ErrRR+riN +++Lr l+ + K++Ka+iL k+v +k+Lq Araip.W4GJ9 77 KNHSEAERRRRERINGHLATLRGLVSST-----DKMDKATILSKVVSQVKELQ 124 58*************************7.....6****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.939 | 74 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-13 | 77 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-10 | 77 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-13 | 78 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-12 | 80 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 1.07E-4 | 159 | 231 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MVYSFYNSNH SSSPGFDVSR LISPSLHDYG ASYGGLEPSH ALILESEKIE QVNNGSEDAR 60 VGKNYENSDA KALAALKNHS EAERRRRERI NGHLATLRGL VSSTDKMDKA TILSKVVSQV 120 KELQRNAMEA SKGLLIPTDF DEVEVEPYED HRSMSYKASI CCDYRPEILF DLRHTLDALE 180 LQLVRAEIST LEGRMKNVFV YRCCKGKGDN NNTEACQALA RNVQKALSLV IDKASNALEY 240 SLRASLPCKR RRICLLEN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 87 | ERRRRE |
2 | 248 | 252 | KRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.W4GJ9 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016190005.1 | 0.0 | putative transcription factor bHLH107 | ||||
Refseq | XP_025638392.1 | 0.0 | putative transcription factor bHLH107 | ||||
TrEMBL | A0A444ZWT5 | 0.0 | A0A444ZWT5_ARAHY; Uncharacterized protein | ||||
STRING | XP_004505138.1 | 1e-101 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8986 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56770.1 | 5e-34 | bHLH family protein |