PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.W3PJ9
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 458aa    MW: 52877.8 Da    PI: 7.7474
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.W3PJ9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.17.7e-1559144190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  kfY++YAk +G s+r+  ++++   +ei+++  +Cs+egk ++e +    +++t+     +C a++ ++  k  g w ++k++l+H+H+++
  Araip.W3PJ9  59 KFYRNYAKAAGLSTRVWCTNRK--GNEIKNQLITCSREGKWKSEISP---TEKTNLIAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCC 144
                  6***************987776..888***************99877...899***************998879**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-1259144IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.124308344IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-4316341IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4319346IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MDHSTSDCQL NPGEVDYEFE SNEVPEVYYI RHDWPLSVVD DELVPKVGMT FTTLEDAGKF  60
YRNYAKAAGL STRVWCTNRK GNEIKNQLIT CSREGKWKSE ISPTEKTNLI AGLNCPARIY  120
IHTLKDVGAW IISKVVLDHS HPCCLSKAEM LKQHRKLSMS IRRTIENNEE ADLYEHRHIW  180
VPIYLDHHFW VGMRSTQRSE SMHSFFNKYI TWNSSLIQFI KQYDNYLGSR EQAERESDAA  240
DFHTVIPCAT KSSIEAQFQD AYTHAKFREV QAQLRGKANC ITRLKNSSLG YSVYEVGEQV  300
SSSIFNKFVV TYNSVAAEVK CQCLLFESRG ILCRHALSVL SFEQVSQVSP RYILERWSKK  360
VKRRHTHIKS SHDEPLMEPR SKRFDQLVFR SQNICEFASE SEELTAILHR AYDNVMAEME  420
SLKAKRKGTS SLSHEDGNPL TSFKARQGFE QEDIQKIG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.W3PJ9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.11e-180protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445BGR80.0A0A445BGR8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.26e-35far-red elongated hypocotyls 3