PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.VY3ZX | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 502aa MW: 57236.6 Da PI: 7.8921 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 46 | 1.8e-14 | 51 | 137 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++++ +ei+++ +Cs+e + + + + +++t+++ +C a++ ++ k + w ++k++l+H+ +++p Araip.VY3ZX 51 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQLITCSREENGNLKISP---TEKTNPTAGLNCPARIYIHTLKdVSAWIISKVVLDHSYPCCP 137 6****************98887..8889**********999988766...8999**************998879************998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.8E-12 | 51 | 137 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 9.186 | 296 | 332 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.3E-4 | 298 | 329 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0014 | 307 | 334 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
MDDSSSDCQL NQGKVDYEFE SNVVPEPLSV VDDQFVPKVG MTFTILEDAG KFYRNYAKAA 60 GFSTRVRSTN RKGNEIKNQL ITCSREENGN LKISPTEKTN PTAGLNCPAR IYIHTLKDVS 120 AWIISKVVLD HSYPCCPSKA EMFKQHRELS MSIRRTIENN EEADRHIWVP IYLDHHFWAG 180 MRSIQRSESM HSFFNKFITR NSSLIQFVKQ YDNCLGSKEQ AERESDAADF HTVIPCATKS 240 SIEAQFQDVY THQKFREVQA QFRGKANCIT RLMNSALGYS VYEVGEQVSS SIFNRFVVTY 300 DSVAAEVKCQ CLLFESRGIL CRHALSVLSF EQIYIGTMEQ EGKEATHTHI KSSHDEPLLE 360 PRSKRFDELV FRSQNICEFA SESEELTAIL HRAYDNVMVE MESLKAKRKG TSFLSHEDAN 420 LESVNELQSP PRIRTRGRPK NRLGSKLDKH ITNATKKKTK GLNELNLFDA ASVVHSNSSQ 480 YQRRVMNYQF RIPAAADNSL GV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.VY3ZX |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ637178 | 0.0 | HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020986710.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3-like | ||||
Refseq | XP_020997233.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A444ZLD8 | 0.0 | A0A444ZLD8_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 1e-25 | far-red elongated hypocotyls 3 |