PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.VTE32
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 488aa    MW: 56254.6 Da    PI: 9.9092
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.VTE32genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.28.8e-2659148290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  fYn+Y++  GF  r+ k+ ++ + gei+++ fvC+++g+re++  +  +++r+++++tr+gC a++++k+++ +g+w+v+++++eHnHela
  Araip.VTE32  59 FYNNYSRLKGFASRRGKTVRN-TAGEIVRYSFVCNRQGFREKKWLEkVDRKREHKVVTRCGCMAEMRIKRKDgSGRWYVSRFVEEHNHELA 148
                  9****************9998.8888***************997664678888999*********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.4E-2359148IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.656289322IPR007527Zinc finger, SWIM-type
SMARTSM005750.0033297324IPR006564Zinc finger, PMZ-type
PfamPF044345.9E-4298319IPR007527Zinc finger, SWIM-type
SuperFamilySSF577567.95E-6426464IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.076445462IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MFLRLKDTMY DTRVEEDAES SDWEGRGASM LPVFLGLDGL RAEDVLEMKF SSPQEAGGFY  60
NNYSRLKGFA SRRGKTVRNT AGEIVRYSFV CNRQGFREKK WLEKVDRKRE HKVVTRCGCM  120
AEMRIKRKDG SGRWYVSRFV EEHNHELAYG KLVGYLRSHR KISEVEVAQL TSMREIGISI  180
PKIYESFAAQ LGGFNLVTFT KQDMCVDFLR DTEDELDFRS WYGTPVLQTE FVELEKSGWT  240
MFTREMFLRF RDSLKRCVRV RICEFNETEN PHAYTLQKYR RPEMNWKVYR DTVANRFTCT  300
CMRMESFGIP CVHILSVCVR LDLVEIPESL VLRRWSKAAK MEVHNQCGEQ HTADRSVTYR  360
TRVGAFSQLC KRLGRVACMS DEDFKLYSKK LLSDALFLEI KNGLRPSTDD LTAAQDCGVK  420
DPIRVRTKGT GRMSQACGSA PKTKRKCSTC GKLGHRRTRC PNGGAQPSPR NDKSPAGINK  480
RKRSKVTA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251256DSLKRC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.VTE32
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016178052.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444ZXD50.0A0A444ZXD5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11042217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-23FAR1-related sequence 5