PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.VE967
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 437aa    MW: 48422.8 Da    PI: 9.8207
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.VE967genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-16139183147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
      Araip.VE967 139 RERWTDEEHKKFLEALKLHGRA-WRRIEEHVG-TKTAVQIRSHAQKF 183
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-16133186IPR009057Homeodomain-like
PROSITE profilePS5129421.187134188IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-9135186IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-15137186IPR006447Myb domain, plants
SMARTSM007175.3E-13138186IPR001005SANT/Myb domain
PfamPF002497.5E-14139182IPR001005SANT/Myb domain
CDDcd001673.39E-10141184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MRATLFRVRD FTCNFHLPLL FTSSPPNVSK LRTFSLCSLH QTILCGITGS YSQEGSVCSF  60
LAENWCLMKV VRHGTGEEVM AIHDQNRVTT SQGSPPVGNE VSSGSELNSV TDIQLKDQFS  120
TTNDGALKVR KPYTIKKQRE RWTDEEHKKF LEALKLHGRA WRRIEEHVGT KTAVQIRSHA  180
QKFFSKVLRD SNGKIINSAE SIEIPPPRPK RKPMHPYPRK LVGTPNKITS VKEQPKRSNS  240
LKSQADFDQE NQSPKSVLTG VGSDSHGSSD SDTPNGSLSP MSSVSGVNSS GFTLVEPKTP  300
SEEAGLNADS AHNENPLVIS QKEIKASMVE ESFGQTVKLF GMTLSVTNTC RPSPPSIEAC  360
KPIPVHINVH CFGKGEGKSE IPSHIVPSET RATSKLRPRM RTETCGRGFV PYKRFMAERE  420
KNHSSTDREE QGIRLSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.VE967
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016190332.10.0protein REVEILLE 2
RefseqXP_025638644.10.0protein REVEILLE 2
TrEMBLA0A444ZVU90.0A0A444ZVU9_ARAHY; Uncharacterized protein
STRINGGLYMA18G05050.11e-138(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.14e-39MYB_related family protein