PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.V8XWP
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 421aa    MW: 46678.4 Da    PI: 10.3009
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.V8XWPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.8e-07319358650
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 
                   + E++RR+++N ++  Lr+l P++     +K++ a ++  A+eY
  Araip.V8XWP 319 FATEKQRREQLNGKYKILRSLFPSP-----TKMDRAFVVGDAIEY 358
                  689*********************9.....899999999999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF485922.49E-3733154No hitNo description
Gene3DG3DSA:1.10.560.102.1E-3534160IPR027413GroEL-like equatorial domain
PfamPF001184.7E-2253171IPR002423Chaperonin Cpn60/TCP-1 family
PRINTSPR003047.1E-147088IPR017998Chaperone tailless complex polypeptide 1 (TCP-1)
PRINTSPR003047.1E-14104123IPR017998Chaperone tailless complex polypeptide 1 (TCP-1)
Gene3DG3DSA:2.60.120.2006.1E-6191267IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF561122.08E-9250319IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.201.2E-10268319No hitNo description
PROSITE profilePS5088811.242313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-8315358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-4319358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-5320358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.08E-4322358No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005524Molecular FunctionATP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MYRLASKLAS SITSSTSWSV IHCVVISSRN YTSKDINFGV GARATILQSV TKVANAVKVT  60
MGPKKSYRNP RITNDGVTVA KSIKFQDKAK NIGADLVKQV AKATNTAVGD GTTCATVLSQ  120
AILTEGCKSI AAGVNVMDLR NGINKAVDAV ITDLKSRAVM ISTPEEITQI ILEIMFVEQL  180
ELLLWLKKKI KMHSNNGRKV KIGVGVGVSV GVLCGLLLAF CLIWKRRKMA TLKETNAALK  240
DQSKKEQEED PEVPLYDLSV IASSTNNFSH KNKLGEGTLE NGQRIAVKRL SASSGQEIKE  300
FKNEIALIAK LQHRNLLNFA TEKQRREQLN GKYKILRSLF PSPTKMDRAF VVGDAIEYSN  360
GIYRIGLTHY SEGSTCLIFI PFIKWFKILI NTIIDNLEQR FYKNLRNENL ASENVVLCIY  420
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4pj1_A1e-36321702817360 kDa heat shock protein, mitochondrial
4pj1_B1e-36321702817360 kDa heat shock protein, mitochondrial
4pj1_C1e-36321702817360 kDa heat shock protein, mitochondrial
4pj1_D1e-36321702817360 kDa heat shock protein, mitochondrial
4pj1_E1e-36321702817360 kDa heat shock protein, mitochondrial
4pj1_F1e-36321702817360 kDa heat shock protein, mitochondrial
4pj1_G1e-36321702817360 kDa heat shock protein, mitochondrial
4pj1_H1e-36321702817360 kDa heat shock protein, mitochondrial
4pj1_I1e-36321702817360 kDa heat shock protein, mitochondrial
4pj1_J1e-36321702817360 kDa heat shock protein, mitochondrial
4pj1_K1e-36321702817360 kDa heat shock protein, mitochondrial
4pj1_L1e-36321702817360 kDa heat shock protein, mitochondrial
4pj1_M1e-36321702817360 kDa heat shock protein, mitochondrial
4pj1_N1e-36321702817360 kDa heat shock protein, mitochondrial
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.V8XWP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1409156e-48AC140915.6 Medicago truncatula chromosome 8 clone mth2-10l24 map 9.500cM, complete sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.12e-08bHLH family protein