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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.V6XXN | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 181aa MW: 20587.6 Da PI: 10.4616 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.6 | 4.3e-18 | 52 | 105 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++tkeq + Le+ F+++ +++ ++++ LA++l+L++rq+ vWFqNrRa+ k Araip.V6XXN 52 KKLRLTKEQSTMLENSFNQHTTLNSAQKKSLAEELNLKTRQIEVWFQNRRARTK 105 66789***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 114.3 | 7.6e-37 | 51 | 143 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk+rl+keq+++LE+sF+++++L++ +K++la+eL+l++rq++vWFqnrRARtk+kq+E+d+e Lk+++++l++en+rL+ke ee++++lk+ Araip.V6XXN 51 NKKLRLTKEQSTMLENSFNQHTTLNSAQKKSLAEELNLKTRQIEVWFQNRRARTKLKQTEVDCELLKKRCQSLTDENRRLKKELEEVTAALKA 143 59*************************************************************************************999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.13E-18 | 35 | 108 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-17 | 36 | 105 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.633 | 47 | 107 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.5E-14 | 49 | 111 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.7E-15 | 52 | 105 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.71E-13 | 52 | 108 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 82 | 105 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 5.5E-8 | 107 | 141 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.5E-14 | 107 | 151 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MTGLSLALAG TVVPNNKKNK PLMVSLHQKK FCSTHQRIDD DGGHHHHHHN NKKLRLTKEQ 60 STMLENSFNQ HTTLNSAQKK SLAEELNLKT RQIEVWFQNR RARTKLKQTE VDCELLKKRC 120 QSLTDENRRL KKELEEVTAA LKATTTTTSP PSLYIQHSKA SPATTLTMCS SCHKLLLPNS 180 N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 107 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.V6XXN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016178158.2 | 1e-130 | homeobox-leucine zipper protein HOX1-like | ||||
Refseq | XP_025631180.1 | 1e-130 | homeobox-leucine zipper protein HOX1 | ||||
Swissprot | P46602 | 1e-44 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | A0A445AUR9 | 1e-129 | A0A445AUR9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA09G07051.1 | 1e-47 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5664 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 1e-38 | homeobox-leucine zipper protein 3 |
Publications ? help Back to Top | |||
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