PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.V6JQR
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARR-B
Protein Properties Length: 584aa    MW: 65622.6 Da    PI: 6.0336
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.V6JQRgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.13.6e-22187253155
      G2-like   1 kprlrWtpeLHerFveaveqLGGs............ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kpr++W+ +LH++Fv aveqLG              ++A+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Araip.V6JQR 187 KPRVVWSVDLHHKFVTAVEQLGIDsnfstlslccvyQEAVPKKILDLMNVEKLTRENVASHLQKYRL 253
                  79*******************74222222222222368****************************8 PP
2Response_reg54.28.4e-19171211109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+++ + +l+++l+k +y +v+++ ++  al+ll+ek+  +Dl++ D+ mp+mdG++ll+     e++lp+i    ++++  + + +  Ga 
   Araip.V6JQR  17 VLAVDDDRTCLIVLKTLLQKCHY-QVTTTNNAITALKLLREKKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI----NDDPRVMMKGIMHGAC 107
                   799********************.***************887778*******************97754.458***9....899************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                    +l+Kp+ +eel +
   Araip.V6JQR 108 FYLVKPVRIEELKN 121
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.6E-1411583IPR017053Response regulator B-type, plant
SuperFamilySSF521725.12E-2913132IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.2E-3513154No hitNo description
SMARTSM004482.2E-2115123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011032.01116127IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.1E-1617121IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.00E-2218127No hitNo description
Gene3DG3DSA:1.10.10.602.7E-27184258IPR009057Homeodomain-like
SuperFamilySSF466898.78E-15185257IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-19187253IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MAVMDEKDHH FPKGMRVLAV DDDRTCLIVL KTLLQKCHYQ VTTTNNAITA LKLLREKKNK  60
FDLVISDVHM PDMDGFKLLE LVGLEMDLPV INDDPRVMMK GIMHGACFYL VKPVRIEELK  120
NIWQHVIRRN KNDSQEPEKP SNNHENPDSD QSSKANKKRK EQEEEEEEEE EDENDHDNGD  180
DPSAQKKPRV VWSVDLHHKF VTAVEQLGID SNFSTLSLCC VYQEAVPKKI LDLMNVEKLT  240
RENVASHLQK YRLYLRRVSN MSNQQHSNIG SAFSSADTSY LRMNPLSGIG QLQTLNNNSG  300
YGLRSFSPSN MLNRFNTPSA LNAHGFNSND TQFQFPSSGL LGRGRSNNNQ TYLSGGGLNS  360
VPNLSTIFDS KQSFVRQKPS SPILGVSNNG LILEQNHQGG IYDNIPNSVG SSSQEQISFP  420
SLLDHHHGNS CNNDIWSNEC NTLMNSSTFQ GGNLSGASSI TSLSSQSHDS FTDLNFQGVN  480
FTNNNNSNNV QFQGWNSNNN NNNQNGNYHA LSGLIDPFSN SSFNRNLDFD FCDASQMKHD  540
GVIDLTEDSS LKPHQLYKTR NTHISNNAGS LEDFVNEIMK QNWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-22183259164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.V6JQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207206.10.0two-component response regulator ARR10-like
RefseqXP_025662164.10.0two-component response regulator ARR10-like
SwissprotB8AEH11e-106ORR23_ORYSI; Two-component response regulator ORR23
SwissprotQ6K8X61e-106ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A445CWI10.0A0A445CWI1_ARAHY; Two-component response regulator
STRINGGLYMA14G13320.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2966122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-101response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]