PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Araip.V6DM9

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 190aa MW: 21166.9 Da PI: 5.8175

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.V6DM9	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.2e-05	41	63	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H+++H Araip.V6DM9 41 YECNFCKRGFSNAQALGGHMNLH 63 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.29E-7	38	68	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.3E-4	39	67	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.427	41	68	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.5E-5	41	65	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	43	63	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MEKQSDDDQD HRRTAEKVVV SSSSDGNEVQ AVNNVNPTRS YECNFCKRGF SNAQALGGHM 60 NLHRKDKAKI KEQQQFSSSS NQTTHHQQFL LEGNLGSNND NNNKELLNVP HQPVMDDETN 120 NNNVVMMRQL PLFSESSSSP HHLQQQEDQI SGQQGPSSSS ELDLELRLGL EPPQGSNSSS 180 ATITGTRKFF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.V6DM9

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016191514.1	1e-138	transcriptional regulator TAC1-like
Refseq	XP_025637009.1	1e-138	transcriptional regulator TAC1-like
TrEMBL	A0A445A9E2	1e-137	A0A445A9E2_ARAHY; Uncharacterized protein
STRING	XP_004507179.1	2e-30	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3335	31	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	7e-15	C2H2 family protein