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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.V1CV3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 231aa MW: 26269.1 Da PI: 9.2142 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.1 | 1.2e-11 | 52 | 127 | 16 | 96 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 lpkkf +++g +++ + l+ ++g +W++ + ++g++++++GWkeF++ L+ g ++ F + + ++ + v++ Araip.V1CV3 52 QKLPKKFSKKYGDGVPNP--VYLKPPDGTVWKIDW--SLYDGMILFENGWKEFASYYSLDNGHMLFFAYYN-ETSNIEVHI 127 479********5554565..***************..*******************************876.444456665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-14 | 35 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.20E-10 | 36 | 129 | No hit | No description |
SuperFamily | SSF101936 | 1.29E-15 | 36 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.899 | 37 | 131 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.9E-7 | 37 | 131 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.4E-9 | 51 | 128 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MASSIFQRNK HSPSSVISFF KIGLKKALKM ETLVSSFMLI TKTSFILSFE LQKLPKKFSK 60 KYGDGVPNPV YLKPPDGTVW KIDWSLYDGM ILFENGWKEF ASYYSLDNGH MLFFAYYNET 120 SNIEVHIHDI ISGFEINYPS LDHISHDNSI KILNELPPRG WPRKKVKAAA EVSSPSTSKR 180 LRSSVKTGDV EKGPDKQNWM QCCKNEEASQ SEETGLKMPT IQSARVDPDS M |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.V1CV3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020970390.1 | 1e-172 | B3 domain-containing protein At1g49475-like | ||||
TrEMBL | A0A444XA76 | 1e-126 | A0A444XA76_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 6e-12 | B3 family protein |