PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HSF

Protein Properties

Length: 207aa MW: 23651.7 Da PI: 8.2133

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.UGV6F	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	101.6	7.1e-32	33	125	2	102
HHHHHHHHHCTG.GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeilede.elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl k+y++le++ + +++sw+ +g+ f+v+ + ef++ Lp++Fkh+nf+SF+RQLn+YgFkk+++++ weFkh++F++g +++l +i Araip.UGV6F 33 FLLKTYDLLEESgNGGKIVSWNGDGSGFIVWSPAEFSDLTLPRFFKHNNFSSFIRQLNTYGFKKISSKR---------WEFKHEKFQRGCRDMLVEI 120 9*******8725579*********************************************999.........*************** PP XXXXX CS HSF_DNA-bind 98 krkks 102 rkk Araip.UGV6F 121 TRKKC 125 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.3E-33	27	118	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	8.4E-41	29	123	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.99E-28	30	123	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	5.8E-11	33	56	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.7E-28	33	123	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.8E-11	72	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	73	97	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.8E-11	85	97	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MDSSNVLELN LGVGNNGGGQ VGQSVRPRCP APFLLKTYDL LEESGNGGKI VSWNGDGSGF 60 IVWSPAEFSD LTLPRFFKHN NFSSFIRQLN TYGFKKISSK RWEFKHEKFQ RGCRDMLVEI 120 TRKKCEPSVF PSYLKSSSEE NAITSNNSME ENNNNSHQLL MEENKNLKKE RLELQMQIAE 180 FKSLEMKLLE CLSQVMDNHQ NKSRGQC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5w_B	2e-16	33	123	4	104	Putative transcription factor
5d5x_B	2e-16	33	123	4	104	Putative transcription factor
5d5x_E	2e-16	33	123	4	104	Putative transcription factor
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.UGV6F

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016193599.1	1e-152	heat stress transcription factor B-2a-like
Refseq	XP_025638231.1	1e-152	heat stress transcription factor B-2a
TrEMBL	I3SY63	1e-111	I3SY63_LOTJA; Uncharacterized protein
STRING	GLYMA01G34490.1	1e-111	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11357	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	1e-34	heat shock transcription factor B2A