PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.U1RD3
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bZIP
Protein Properties Length: 289aa    MW: 31674.4 Da    PI: 5.0573
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.U1RD3genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.92.9e-15210271162
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                  +ke kr +r+ +NR++A+  R+RKka++  Le++vk Le++N++Lk++l++l++e + l++ 
  Araip.U1RD3 210 DKENKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQI 271
                  5899*****************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.88E-24170No hitNo description
PfamPF145691.3E-26165IPR027934Cellulose synthase, RING-type zinc finger
Gene3DG3DSA:3.30.40.104.5E-21176IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM003382.6E-16210274IPR004827Basic-leucine zipper domain
PfamPF001708.3E-14211272IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.691212275IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-16214274No hitNo description
SuperFamilySSF579596.88E-13214272No hitNo description
CDDcd147041.43E-20215266No hitNo description
PROSITE patternPS000360217232IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MCGDTVGLTA TGDVFVACQE CSFPLCHRCY ECECENGNQS CPQCKTRYNS HKDSSHLEGD  60
EDDDEDDDDV DDIENEVNYG EGNINKAGMQ WEEDADLSSS SGHDSRMPNS NLHITNGQPQ  120
SGEKPCATPD TKSVQATSGP LGPSKAHSLS YTDSKQPGLE SDEEVRRVPE IGGESAGPSA  180
SRPGAGPTGG QERGQGTRDG QRKRGRSPAD KENKRLKRLL RNRVSAQQAR ERKKAYLIDL  240
ETRVKDLEKK NSELKERLST LQNENQMLRQ ILKNTTASRR GSNSGTNAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1weo_A3e-151572177cellulose synthase, catalytic subunit (IRX3)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.U1RD3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016180362.10.0cellulose synthase A catalytic subunit 1 [UDP-forming]
RefseqXP_025681249.10.0cellulose synthase A catalytic subunit 1 [UDP-forming]
TrEMBLA0A444XA140.0A0A444XA14_ARAHY; Uncharacterized protein
STRINGGLYMA08G41450.11e-144(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70643248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.17e-48bZIP family protein