PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.U04GE
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 589aa    MW: 66957.1 Da    PI: 7.2168
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.U04GEgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1652.1e-2059152190
         FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                  +fY+++Ak++GFs+r+++++ +    + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a l++ k++     +w+vt +++ HnHel 
  Araip.U04GE  59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQVKPSDDGKMQRNRKSSRCGCQAYLRIVKKSdfdVPEWRVTGFSNVHNHELL 152
                  6***************9998874556679*******************9*******************98887676789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1759152IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.693386419IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-5393416IPR007527Zinc finger, SWIM-type
SMARTSM005753.7E-5394421IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MSEGTSLVLE SSENCTDLSQ DEIGTIEETP EETILSRQTS VNLVPFIGQR FVSQEAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGYP QVKPSDDGKM QRNRKSSRCG  120
CQAYLRIVKK SDFDVPEWRV TGFSNVHNHE LLKSNEKGIK VGCLPFTEMD VRNLLQSFRN  180
VERDNDAIDL IAMCKRLKDE NPNFKRIMMK TCSPLTDAFL YNLELMEDFE EGWRQMIDKY  240
RLHTNKHIIS LHSLRMFWAL PFLRRYFFAG LTSTSQSESI NAFIQRFLSA QSQLDHFVEQ  300
VCDVADIVDF NDRAGLKQKM QRKAQKVCLK TGSPVESHAA TVLTPYALSK LQDELVLAPQ  360
YASFLVDEGC FQVRHHTQTD GGCKVFWVPC QAHITCSCHL FEFSGTLCRH VLRVMSTNNC  420
FHIPDQYLPT RWRGGSLSSV NQFRGVTTRD QPERMQFLES MVSTLIMESI ETEERLDVAC  480
EQMSVALSRI KALPRPPAHG VNDITYSYSS DSLILPEVED TDGIIHGFAN PHDSIALGKL  540
KERRARDVVD VTRKRRQFPG PLCGQYVHDP SDCSIMAGDN LGGDGLGYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1551556TRKRRQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.U04GE
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025646533.10.0protein FAR1-RELATED SEQUENCE 11 isoform X1
RefseqXP_025646534.10.0protein FAR1-RELATED SEQUENCE 11 isoform X1
SwissprotQ9SY661e-104FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A444ZF990.0A0A444ZF99_ARAHY; Uncharacterized protein
STRINGXP_007138969.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.11e-106FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]