PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Araip.TXW03

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Protein Properties

Length: 285aa MW: 33042.6 Da PI: 9.9225

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.TXW03	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.5	1.1e-13	5	80	17	98
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +p+kf +++gg+ +++ ++l+ ++g +W++ ++++g++++++GWkeF+ L+ g ++ F+++g+s+ +v +f+ Araip.TXW03 5 KIPNKFSRKYGGDMPNP--VQLQPPDGTEWRIDW--TNHDGEILFENGWKEFATFYTLENGHVLWFEYNGTSNI--KVNIFD 80 69******9998776..***********..*****************************9986555..888886 PP
2	B3	39.2	1.2e-12	222	283	37	99
EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++ e+ ++W +liy +++ +++ +W+ F ++n+Lk+gD+++F+l++r++ l+v+++r+ Araip.TXW03 222 RMYFENRKQWHATLIYYPNRKNALIS-NWRLFLEENNLKAGDVCIFELINRQGPDLKVHIRRS 283 4555678*******9998777666.******************999999***996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	12.915	1	82	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0026	2	82	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.8E-11	5	80	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.37E-16	5	89	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.8E-16	5	82	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.76E-9	6	80	No hit	No description
Gene3D	G3DSA:2.40.330.10	3.7E-12	192	283	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.73E-12	193	282	No hit	No description
SuperFamily	SSF101936	1.12E-13	193	283	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.002	200	284	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.5E-10	226	283	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.236	229	284	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MALQKIPNKF SRKYGGDMPN PVQLQPPDGT EWRIDWTNHD GEILFENGWK EFATFYTLEN 60 GHVLWFEYNG TSNIKVNIFD MSALEIDYPS NGRIGDDNSV EILDEPPARR GRGRPKKNVI 120 AEPKQSRAST STSKIMKSAI KTKDIDKNPN TKKLKQHVEN EKDGQSEESA DLKLPIIQRA 180 RPDMDVIREA KKFKSKNPSF VIKIKQMHQT GSPANLPVCF FRMYFENRKQ WHATLIYYPN 240 RKNALISNWR LFLEENNLKA GDVCIFELIN RQGPDLKVHI RRSHD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.TXW03

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029152061.1	0.0	B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBL	A0A444XAP3	0.0	A0A444XAP3_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF98	34	369

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	9e-26	B3 family protein