PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Araip.TU4HL

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

TCP

Protein Properties

Length: 389aa MW: 42877.3 Da PI: 9.4294

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.TU4HL	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	157	1.1e-48	45	209	1	137
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaessss 80 +a+kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t+eWLl+++k+aikel+++ sss Araip.TU4HL 45 PAPKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLLTKSKRAIKELARSknsssgnnnggvannnsfSSS------------ 130 589************************************************************444433333333333221111............ PP TCP 81 sasnsssg.............................kaaksaakskksqksaasalnlakesrakarararertrekmriknkln 137 + + + +++q+++++ ++++kesr+karararert++km++++k + Araip.TU4HL 131 -------SsdgvdddevdsvinqqqltdnidgtheqgGVDSLERRLRRDQQKDEESRAKMKESREKARARARERTSSKMCNSEKVQ 209 .......1112333344444445555566888888864444444666666777777***********************98866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.6E-44	47	204	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	36.324	48	106	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	11.188	184	201	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MTNLAVADAM FKQEYFTAGG GGGGGGSSHH HHHHYGMSSL ITKRPAPKKD RHSKIHTSQG 60 LRDRRVRLSI EIARKFFDLQ DMLGFDKASN TLEWLLTKSK RAIKELARSK NSSSGNNNGG 120 VANNNSFSSS SSDGVDDDEV DSVINQQQLT DNIDGTHEQG GVDSLERRLR RDQQKDEESR 180 AKMKESREKA RARARERTSS KMCNSEKVQE LKKKSPAMVM EEDPQILMQH QQLRAPMIQP 240 LEESSMRSSP KLFQPHHLAA AGGGGGGGGG GGGGSSEVPR DDFNVIEESI VIRRKLKQSL 300 MSSSSSSSNN HHHQNHNVIP KEATNFNNNN SNNSDYHCFP NLSSPNWESN ASAATNNGRS 360 NVCTISSMNL STRLQIFGKS WEECTNPHL

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MTNLAVADAM FKQEYFTAGG GGGGGGSSHH HHHHYGMSSL ITKRPAPKKD RHSKIHTSQG  60
LRDRRVRLSI EIARKFFDLQ DMLGFDKASN TLEWLLTKSK RAIKELARSK NSSSGNNNGG  120
VANNNSFSSS SSDGVDDDEV DSVINQQQLT DNIDGTHEQG GVDSLERRLR RDQQKDEESR  180
AKMKESREKA RARARERTSS KMCNSEKVQE LKKKSPAMVM EEDPQILMQH QQLRAPMIQP  240
LEESSMRSSP KLFQPHHLAA AGGGGGGGGG GGGGSSEVPR DDFNVIEESI VIRRKLKQSL  300
MSSSSSSSNN HHHQNHNVIP KEATNFNNNN SNNSDYHCFP NLSSPNWESN ASAATNNGRS  360
NVCTISSMNL STRLQIFGKS WEECTNPHL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.TU4HL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY225842	7e-57	AY225842.1 Machaerium scleroxylon isolate 2 LEGCYC gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016196301.1	0.0	transcription factor DICHOTOMA-like
TrEMBL	A0A444WNB9	0.0	A0A444WNB9_ARAHY; Uncharacterized protein
STRING	XP_007151756.1	1e-105	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1738	32	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	5e-27	TCP family protein