 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Araip.TJ9SW |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
| Family |
M-type_MADS |
| Protein Properties |
Length: 256aa MW: 28620 Da PI: 11.0761 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Araip.TJ9SW | genome | NCGR_PGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 93.8 | 7.7e-30 | 204 | 253 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nrqvtf+k rng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
Araip.TJ9SW 204 KRIENTTNRQVTFCKHRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 253
79***********************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 256 aa
Download sequence Send
to blast |
MLLISFIIQN PFSLQRTQKA RTLKASKNPS PHPSTPSSLS LLALPPSLLL RRWFSLVVTP 60
SSHTVRRKLS VASLSGGDFL RVHSVDSEQP LDPESIFSEN DEDSSPKFRG RRGVLHLFRS 120
SSHSSIPSPS SGSSLVFILT VPNHLSFDDL IRWCGPHLHH LHRLLFIRVG IGEIKKMAFP 180
GANESMSGAS SPQRKMGRGK IEIKRIENTT NRQVTFCKHR NGLLKKAYEL SVLCDAEVAL 240
IVFSSRGRLY EYANNR
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 8e-20 | 196 | 253 | 1 | 58 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 8e-20 | 196 | 253 | 1 | 58 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 8e-20 | 196 | 253 | 1 | 58 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 8e-20 | 196 | 253 | 1 | 58 | Myocyte-specific enhancer factor 2B |
| 6c9l_A | 8e-20 | 196 | 253 | 1 | 58 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 8e-20 | 196 | 253 | 1 | 58 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 8e-20 | 196 | 253 | 1 | 58 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 8e-20 | 196 | 253 | 1 | 58 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 8e-20 | 196 | 253 | 1 | 58 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 8e-20 | 196 | 253 | 1 | 58 | Myocyte-specific enhancer factor 2B |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AY382833 | 3e-58 | AY382833.1 Glycine max MADS-box protein mRNA, complete cds. |
| GenBank | KT760579 | 3e-58 | KT760579.1 Thermopsis turcica floral homeotic protein AGAMOUS mRNA, complete cds. |
