PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.TE0TX | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | TALE | ||||||||
Protein Properties | Length: 272aa MW: 30935 Da PI: 5.4608 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.1 | 4e-10 | 215 | 249 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp+++++ eLAk++gL+++q+ +WF N+R ++ Araip.TE0TX 215 KWPYPTEADKIELAKSTGLDQKQINNWFINQRKRH 249 579*****************************885 PP | |||||||
2 | ELK | 32.2 | 2.4e-11 | 169 | 190 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrK+++++g+Lk EFs Araip.TE0TX 169 ELKDRLLRKFGSHIGTLKLEFS 190 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.2E-24 | 28 | 72 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.8E-23 | 30 | 71 | IPR005540 | KNOX1 |
SMART | SM01256 | 4.1E-26 | 79 | 130 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.2E-24 | 83 | 129 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.83 | 169 | 189 | IPR005539 | ELK domain |
Pfam | PF03789 | 3.0E-8 | 169 | 190 | IPR005539 | ELK domain |
SMART | SM01188 | 6.5E-6 | 169 | 190 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.281 | 189 | 252 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-20 | 190 | 261 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.3E-14 | 191 | 256 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-28 | 194 | 253 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.16E-13 | 201 | 253 | No hit | No description |
Pfam | PF05920 | 3.0E-18 | 209 | 248 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 227 | 250 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MLGSDELLSA AGIQQQQPPH NNEAMASTMM KAKIASHPHY PRLLQAYIDC QKVGAPPEIA 60 CLLEEIRREN DLFKRDDVVS TCFGADPELD EFMETYCELL VKYKSDLARP FDEATSFLNK 120 IEMQLSNLCC NGASVPTLSD DGAVSSEEDF SAGDGDGGQD GQSRGEDREL KDRLLRKFGS 180 HIGTLKLEFS KKKKKGKLPK EARQTLLQWW NVHYKWPYPT EADKIELAKS TGLDQKQINN 240 WFINQRKRHW KPSENMQFSM MENLGGRFLP DE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00670 | PBM | Transfer from GRMZM2G087741 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.TE0TX |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016202430.1 | 0.0 | homeobox protein knotted-1-like 6 isoform X2 | ||||
Refseq | XP_025654240.1 | 0.0 | homeobox protein knotted-1-like 6 isoform X2 | ||||
Swissprot | Q84JS6 | 1e-136 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | A0A444Z6Z3 | 0.0 | A0A444Z6Z3_ARAHY; Uncharacterized protein | ||||
STRING | XP_007157365.1 | 1e-155 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF620 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 1e-124 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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