PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.TBD1T
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 396aa    MW: 44626.7 Da    PI: 10.2576
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.TBD1TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.41.2e-153069241
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                 ri+n++ +qvtfskRrn +lKKA+ELS+L +a+v +i  s
  Araip.TBD1T 30 RIDNSTSQQVTFSKRRNRLLKKAKELSILSNAKVGLIKKS 69
                 8**********************************99665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.6E-172175IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-162169IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.8992166IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-122343IPR002100Transcription factor, MADS-box
PfamPF003191.3E-133066IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-124358IPR002100Transcription factor, MADS-box
PfamPF070582.3E-4565186IPR009768Microtubule-associated protein 70
SuperFamilySSF561122.2E-8258332IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.201.3E-8259307No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007010Biological Processcytoskeleton organization
GO:0003677Molecular FunctionDNA binding
GO:0008017Molecular Functionmicrotubule binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MIQSQTQFHS SKVGTLKLIA MGREKIAIRR IDNSTSQQVT FSKRRNRLLK KAKELSILSN  60
AKVGLIKKSK ELATCQGEVK ALRATEALKD KAIEELRNEV SKLDQKLRIT ENHLKDKNLE  120
IKKLTEEKKD ALAAQYVAEA TLRRVHLDQK DDDYIPFKSV ITPLEDEIKL YKNEIKALQK  180
DKKALSIYID IPGSGGSNAN NQWRSFFKLL KKGSQMPFQP FHILKKNVPK LTRRKSKKAA  240
TDDFSHSMVV LVYYIFMVRN DNVIGEGGYA EVYLEKLEDG TFVAIKKLTR GNQEEMTADF  300
LSELGIICCI LSLLSKFCLS STLHNRWLKQ ATLQLHLTHF DPRCYKSGIS HSPAALVSLV  360
GSSQTSSVPS SVKIESPITK IQTSISSTKN EVEQAG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.TBD1T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A444XPA30.0A0A444XPA3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2076924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.23e-16AGAMOUS-like 16