PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.T5IRH
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 417aa    MW: 46252.5 Da    PI: 7.9376
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.T5IRHgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.7e-117296226
                 -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                 +++ C +++ t tCk+Gd+CkF H+
  Araip.T5IRH 72 GEKDCAHYMLTRTCKFGDSCKFDHP 96
                 7889********************8 PP
2zf-CCCH31.23.7e-10125149327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C++f +t  Ck+G++CkF+H++
  Araip.T5IRH 125 EPDCPYFIKTQRCKFGSKCKFNHPR 149
                  789********************96 PP
3zf-CCCH35.51.7e-11165189327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++lC f+ +tG Ck+G++C+F+H++
  Araip.T5IRH 165 EPLCAFYVKTGRCKFGATCRFHHPK 189
                  79*********************96 PP
4zf-CCCH40.45e-13239262326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  ++ C+f+++tG CkyG++C+++H+
  Araip.T5IRH 239 EVDCPFYMKTGSCKYGATCRYNHP 262
                  789********************9 PP
5zf-CCCH421.5e-13325348326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  + +C+f+++tG+Ck+G+rCkF+H+
  Araip.T5IRH 325 QIECDFYMKTGECKFGERCKFHHP 348
                  568********************9 PP
6zf-CCCH43.45.4e-14370394327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   ++C+++++tGtCk+G++CkF H+p
  Araip.T5IRH 370 VSICPYYMKTGTCKFGATCKFDHPP 394
                  689********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00117097IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5077098IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-57197IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-87296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-47695IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061122150IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-4122149IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-7125149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5127150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4128149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.835162190IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6162189IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6165190IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-9165189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5167188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906236264IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-6236263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5239264IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10239262IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-5242261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507322350IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-7322349IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6323350IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-11326348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5328348IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-7367394IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854367395IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-11369394IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6370394IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-6371392IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
FLPSPPDLTL PPHPTCFKLL LGHRRPPLYY PTILGIPNTV GQSEAWYSTN SLAKRPRYES  60
GSNLPIYPQR PGEKDCAHYM LTRTCKFGDS CKFDHPIWVP DGGIPDWKEI SNTVSSETLP  120
ERIGEPDCPY FIKTQRCKFG SKCKFNHPRS SENGEISALP ERPSEPLCAF YVKTGRCKFG  180
ATCRFHHPKD IQILTSDELS YNAEQTQENS IREGATGDTQ SFLSPLLHNS KGLPVRMGEV  240
DCPFYMKTGS CKYGATCRYN HPDRNAIYPP VATFGSSMVT SMAANLSIGS INPSVPIYQA  300
YDPRLSNPMS QLGVAEIMYP QRPGQIECDF YMKTGECKFG ERCKFHHPLD RSATSSIKLT  360
PAGLPRREGV SICPYYMKTG TCKFGATCKF DHPPPGEVIE IAKSQGTSAT DGGEADS
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.T5IRH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352781e-64AC235278.1 Glycine max strain Williams 82 clone GM_WBb0048F23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016170465.10.0zinc finger CCCH domain-containing protein 37
SwissprotQ941Q31e-173C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A444XZS10.0A0A444XZS1_ARAHY; Uncharacterized protein
STRINGXP_007133464.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-176floral homeotic protein (HUA1)